View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1086_low_3 (Length: 464)
Name: NF1086_low_3
Description: NF1086
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1086_low_3 |
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| [»] chr8 (8 HSPs) |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 346; Significance: 0; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 11 - 464
Target Start/End: Complemental strand, 38609481 - 38609028
Alignment:
| Q |
11 |
cacagagccacaaactaaacaacaatgtgagttaactacaaattcagagtttcactttagtatatgaacaacagtgtaactgtaaacttattaactacaa |
110 |
Q |
| |
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|||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
38609481 |
cacaaagccacaaactaaacaacaatgcgagttaactacaaattcagagtttcactttagtacatgaacaacagtgtaactgtaaacttattaactacaa |
38609382 |
T |
|
| Q |
111 |
atttaatagagattcacttcagcagagaaagaactaaaccgcaatcttcatcatcatcgaagcatcgcactcacaggccatggtgatcttcaatctcaac |
210 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38609381 |
atttcatagagattcacttcagcagagaaagaactaaaccgcaatcttcatcatcatcgaagcatcgcactcacaggccatggtgatcttcaatctcaac |
38609282 |
T |
|
| Q |
211 |
cattggcttgacctgaggcatgggagacacacctgctgcagcagtgacatcagcagcacaatcaccacgtccatcaagagcagagcaggattcttccgtc |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||| || ||||||| ||||||||||| ||||||||||||||||||||||||||| |||||||||| |
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| T |
38609281 |
cattggcttgacctgaggcatgggagacacacctgctgtagtagtgacaccagcagcacaaccaccacgtccatcaagagcagagcaggtttcttccgtc |
38609182 |
T |
|
| Q |
311 |
gcctgaccagcagaatctgatacagtagcagctctggctccgacacccgctccttccaatgctccttcacctcctaagatagtatcataagcagccgcaa |
410 |
Q |
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|||||||| | ||||||| ||| ||| | |||| |||||| ||||| ||||||||| | ||||||||||||||||| |||||||||||||||||||||| |
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| T |
38609181 |
gcctgacctggagaatctaataaagttgatgctccggctccaacacctgctccttccgacgctccttcacctcctaatatagtatcataagcagccgcaa |
38609082 |
T |
|
| Q |
411 |
taggagtgatatgcggaagaggcaaatacgcgttgtgcacaactatcttcacat |
464 |
Q |
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| T |
38609081 |
taggattgatatgcggaaaaggcaaatacacactgtgcacaactatcttcacat |
38609028 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 11 - 464
Target Start/End: Complemental strand, 38794264 - 38793811
Alignment:
| Q |
11 |
cacagagccacaaactaaacaacaatgtgagttaactacaaattcagagtttcactttagtatatgaacaacagtgtaactgtaaacttattaactacaa |
110 |
Q |
| |
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|||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
38794264 |
cacaaagccacaaactaaacaacaatgcgagttaactacaaattcagagtttcactttagtacatgaacaacagtgtaactgtaaacttattaactacaa |
38794165 |
T |
|
| Q |
111 |
atttaatagagattcacttcagcagagaaagaactaaaccgcaatcttcatcatcatcgaagcatcgcactcacaggccatggtgatcttcaatctcaac |
210 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38794164 |
atttcatagagattcacttcagcagagaaagaactaaaccgcaatcttcatcatcatcgaagcatcgcactcacaggccatggtgatcttcaatctcaac |
38794065 |
T |
|
| Q |
211 |
cattggcttgacctgaggcatgggagacacacctgctgcagcagtgacatcagcagcacaatcaccacgtccatcaagagcagagcaggattcttccgtc |
310 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| || ||||||| ||||||||||| ||||||||||||||||||||||||||| |||||||||| |
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| T |
38794064 |
cattggcttgacctgaggcatgggagacacacctgctgtagtagtgacaccagcagcacaaccaccacgtccatcaagagcagagcaggtttcttccgtc |
38793965 |
T |
|
| Q |
311 |
gcctgaccagcagaatctgatacagtagcagctctggctccgacacccgctccttccaatgctccttcacctcctaagatagtatcataagcagccgcaa |
410 |
Q |
| |
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|||||||| | ||||||| ||| ||| | |||| |||||| ||||| ||||||||| | ||||||||||||||||| |||||||||||||||||||||| |
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| T |
38793964 |
gcctgacctggagaatctaataaagttgatgctccggctccaacacctgctccttccgacgctccttcacctcctaatatagtatcataagcagccgcaa |
38793865 |
T |
|
| Q |
411 |
taggagtgatatgcggaagaggcaaatacgcgttgtgcacaactatcttcacat |
464 |
Q |
| |
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||||| |||||||||||| |||||||||| | ||||||||||||||||||||| |
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| T |
38793864 |
taggattgatatgcggaaaaggcaaatacacactgtgcacaactatcttcacat |
38793811 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 91 - 464
Target Start/End: Original strand, 38120719 - 38121095
Alignment:
| Q |
91 |
tgtaaacttattaactacaaatttaatagagattcacttcagcagagaaagaactaaaccgcaatcttcat---catcatcgaagcatcgcactcacagg |
187 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
38120719 |
tgtaaacttattaactacaaatttcatagagattcacttcagcagagaaagaactaaaccgcaatcttcatcatcatcatcgaagcatcgcactcacagg |
38120818 |
T |
|
| Q |
188 |
ccatggtgatcttcaatctcaaccattggcttgacctgaggcatgggagacacacctgctgcagcagtgacatcagcagcacaatcaccacgtccatcaa |
287 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||| |
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| T |
38120819 |
ccatggtgatcttcaatctcaaccattggcttgacctgaggcatgggagacacacctgctgcagtagtgacatcagcagcacaaccaccacgtccatcag |
38120918 |
T |
|
| Q |
288 |
gagcagagcaggattcttccgtcgcctgaccagcagaatctgatacagtagcagctctggctccgacacccgctccttccaatgctccttcacctcctaa |
387 |
Q |
| |
|
|||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
38120919 |
gagcagagcaggtttcttccgtggcctgaccagcagaatctgatacagtagcagctctggctccgacacccgctccttccgatgctccttcacctcctaa |
38121018 |
T |
|
| Q |
388 |
gatagtatcataagcagccgcaataggagtgatatgcggaagaggcaaatacgcgttgtgcacaactatcttcacat |
464 |
Q |
| |
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|||||||||||||||||||||||||||| |||||||||||| |||||||||| || |||||||||| |||||||||| |
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| T |
38121019 |
gatagtatcataagcagccgcaataggattgatatgcggaaaaggcaaatacacgctgtgcacaacaatcttcacat |
38121095 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 136 - 246
Target Start/End: Complemental strand, 34592957 - 34592844
Alignment:
| Q |
136 |
agaaagaactaaaccgcaatcttcatcatcatc---gaagcatcgcactcacaggccatggtgatcttcaatctcaaccattggcttgacctgaggcatg |
232 |
Q |
| |
|
|||||||| |||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||| ||||| |||||| | |
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| T |
34592957 |
agaaagaagtaaaccgcaatcttcatcatcatcattgaagcatcacactcacaggccatggtgatcttcaatctcaaccattggcctgacccgaggcacg |
34592858 |
T |
|
| Q |
233 |
ggagacacacctgc |
246 |
Q |
| |
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|||||||||||||| |
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| T |
34592857 |
ggagacacacctgc |
34592844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 11 - 68
Target Start/End: Complemental strand, 34593027 - 34592970
Alignment:
| Q |
11 |
cacagagccacaaactaaacaacaatgtgagttaactacaaattcagagtttcacttt |
68 |
Q |
| |
|
|||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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|
| T |
34593027 |
cacaaagccacaaactaaacaacaatgcaagttaactacaaattcagagtttcacttt |
34592970 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 102 - 150
Target Start/End: Complemental strand, 38287498 - 38287450
Alignment:
| Q |
102 |
taactacaaatttaatagagattcacttcagcagagaaagaactaaacc |
150 |
Q |
| |
|
||||||||| ||| |||||| |||||||||||||| |||||| |||||| |
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|
| T |
38287498 |
taactacaagtttcatagagtttcacttcagcagaaaaagaagtaaacc |
38287450 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 31 - 67
Target Start/End: Complemental strand, 38609538 - 38609502
Alignment:
| Q |
31 |
aacaatgtgagttaactacaaattcagagtttcactt |
67 |
Q |
| |
|
|||||||||| ||||||||||||||| |||||||||| |
|
|
| T |
38609538 |
aacaatgtgaattaactacaaattcaaagtttcactt |
38609502 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 31 - 67
Target Start/End: Complemental strand, 38794321 - 38794285
Alignment:
| Q |
31 |
aacaatgtgagttaactacaaattcagagtttcactt |
67 |
Q |
| |
|
|||||||||| ||||||||||||||| |||||||||| |
|
|
| T |
38794321 |
aacaatgtgaattaactacaaattcaaagtttcactt |
38794285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 262; Significance: 1e-146; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 91 - 464
Target Start/End: Original strand, 28730296 - 28730669
Alignment:
| Q |
91 |
tgtaaacttattaactacaaatttaatagagattcacttcagcagagaaagaactaaaccgcaatcttcatcatcatcgaagcatcgcactcacaggcca |
190 |
Q |
| |
|
|||||||||||||||||||||||| ||| || || |||||||||||||||||| |||| |||||||||| |||| ||| || |||| ||||||||||||| |
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| T |
28730296 |
tgtaaacttattaactacaaatttcatatagttttacttcagcagagaaagaagtaaatcgcaatcttcgtcatgatcaaaccatcacactcacaggcca |
28730395 |
T |
|
| Q |
191 |
tggtgatcttcaatctcaaccattggcttgacctgaggcatgggagacacacctgctgcagcagtgacatcagcagcacaatcaccacgtccatcaagag |
290 |
Q |
| |
|
||||||||||||||||||| ||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||| |||||||||| |
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|
| T |
28730396 |
tggtgatcttcaatctcaaacattggcctgacctgaggcatgggagacacacctgttgcagcagtgacatcagcagcacagccaccacgcccatcaagag |
28730495 |
T |
|
| Q |
291 |
cagagcaggattcttccgtcgcctgaccagcagaatctgatacagtagcagctctggctccgacacccgctccttccaatgctccttcacctcctaagat |
390 |
Q |
| |
|
||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||| |
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| T |
28730496 |
cagagcaggtttcttcagtcgcctgaccagcagaatctgatacagtagcagctctggctccgacacctgctccttccgatgctccttcacctcctaagat |
28730595 |
T |
|
| Q |
391 |
agtatcataagcagccgcaataggagtgatatgcggaagaggcaaatacgcgttgtgcacaactatcttcacat |
464 |
Q |
| |
|
||||||||||||| ||||||||||| |||||||||||| |||||||||| | | ||||||||||||||||||| |
|
|
| T |
28730596 |
agtatcataagcatccgcaataggattgatatgcggaaaaggcaaatacacactatgcacaactatcttcacat |
28730669 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 11 - 204
Target Start/End: Complemental strand, 33078655 - 33078483
Alignment:
| Q |
11 |
cacagagccacaaactaaacaacaatgtgagttaactacaaattcagagtttcactttagtatatgaacaacagtgtaactgtaaacttattaactacaa |
110 |
Q |
| |
|
|||| |||||||||||||||||||||| |||||||||||||||||||||||||||||| ||| |||||||||||| ||||||||||||||||||| |
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| T |
33078655 |
cacaaagccacaaactaaacaacaatgcgagttaactacaaattcagagtttcacttttgtacatgaacaacagt------gtaaacttattaactacaa |
33078562 |
T |
|
| Q |
111 |
atttaatagagattcacttcagcagagaaagaactaaaccgcaatcttcatcatcatc---gaagcatcgcactcacaggccatggtgatcttcaat |
204 |
Q |
| |
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|||| ||||||||||| |||||||| ||||||||||||||| ||||||||||| |||||| ||||||||||||||||| |
|
|
| T |
33078561 |
attt------------------cagagaaagaagtaaaccgcgatcttcatcatcatcattgaagcatcgcagtcacagcccatggtgatcttcaat |
33078483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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