View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1086_low_6 (Length: 404)
Name: NF1086_low_6
Description: NF1086
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1086_low_6 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 324; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 1 - 375
Target Start/End: Original strand, 42210861 - 42211234
Alignment:
| Q |
1 |
ttttttgagttctccatatttgagtcttaatccaataaagaaaaataagatctcatgtgaagtgaggatcacacactcttaacttttttagttaatactt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
42210861 |
ttttttgagttctccatatttgagtcttaatccaataaagaaaaataagatctcatgtgaagtgaggatcacacactcttaacttttt-agttaatactt |
42210959 |
T |
|
| Q |
101 |
ccttcctatactctcaaaagtattctctctacacactctaaacaaaaactagcaaatattttacttaaattgataatgannnnnnnnngaatttaaaggt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
42210960 |
ccttcctatactctcaaaagtattctctctacccactctaaacaaaaaatagcaaatattttacttaaattgataatgaatttttttcgaatttaaaggt |
42211059 |
T |
|
| Q |
201 |
gacgaaccatcggtttaaaacaatagcattacaattcttttctccgtttgttattaatctgatgtggcaattatgacggtatttgtcggttatctttaaa |
300 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
42211060 |
gatgaaccatcggtttaaaacaatagcattacaattcttttctccgtttgttattaatctgatgtggcaattatgacggtatttgttggttatctttaaa |
42211159 |
T |
|
| Q |
301 |
aagttgctttgaacctactccaccacctttctataagttccctctaacggatgtaacatatttataacactatta |
375 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42211160 |
aagttgctttgaacctactccaccacctttctataagttccctctaacggatgtaacatatttataacactatta |
42211234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University