View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1086_low_8 (Length: 390)

Name: NF1086_low_8
Description: NF1086
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1086_low_8
NF1086_low_8
[»] chr7 (3 HSPs)
chr7 (83-323)||(44267146-44267386)
chr7 (83-260)||(6997533-6997710)
chr7 (315-377)||(44266486-44266548)
[»] chr2 (2 HSPs)
chr2 (83-261)||(38502983-38503161)
chr2 (320-377)||(38503159-38503216)
[»] chr4 (8 HSPs)
chr4 (83-261)||(46596948-46597126)
chr4 (83-257)||(6678897-6679071)
chr4 (98-261)||(22505884-22506047)
chr4 (320-377)||(6679073-6679130)
chr4 (320-377)||(22505829-22505886)
chr4 (83-197)||(50959495-50959609)
chr4 (310-377)||(50959606-50959676)
chr4 (320-377)||(46596893-46596950)
[»] chr5 (4 HSPs)
chr5 (83-261)||(18380-18558)
chr5 (98-261)||(21291782-21291945)
chr5 (320-377)||(21291943-21292000)
chr5 (320-377)||(18556-18613)
[»] chr6 (1 HSPs)
chr6 (174-296)||(28031522-28031644)
[»] chr8 (2 HSPs)
chr8 (320-375)||(43733852-43733907)
chr8 (223-261)||(43733816-43733854)


Alignment Details
Target: chr7 (Bit Score: 149; Significance: 1e-78; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 83 - 323
Target Start/End: Complemental strand, 44267386 - 44267146
Alignment:
Q  83 gacatagagacacgatctggaattagaatcagagggcgtcaatcttcttttttccatcaaacgtcaatcaacacgccgccttcccgctgctttcaatcgc 182  Q
    |||||||| || || |||||||||||||||||| |||  | |||| ||||   |||||||||||||||| || |||||||||||||| ||||||||||||    
T  44267386 gacatagacacgcgctctggaattagaatcagacggcaccgatctgctttccgccatcaaacgtcaatcgacgcgccgccttcccgcggctttcaatcgc 44267287  T
Q  183 cactgtcatcatctgactcaccttgctgttctgtgttgtctgggaccatcaaaaacacttgggtcccactttttagaggtcgtttggagatttatttgaa 282  Q
    |||||||||||| |||||||||||| ||||||||||||| ||||||| |||| |||||||||||||||||||||||||||||||||||||||| ||||||    
T  44267286 cactgtcatcatttgactcaccttgttgttctgtgttgtttgggaccgtcaacaacacttgggtcccactttttagaggtcgtttggagatttctttgaa 44267187  T
Q  283 gttgattgatttttcgtcagttttttctctgcgtttcaggc 323  Q
    |||||||| |||||||||||||||||||| | |||||||||    
T  44267186 gttgattggtttttcgtcagttttttctcggtgtttcaggc 44267146  T

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Target: chr7; HSP #2
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 83 - 260
Target Start/End: Original strand, 6997533 - 6997710
Alignment:
Q  83 gacatagagacacgatctggaattagaatcagagggcgtcaatcttcttttttccatcaaacgtcaatcaacacgccgccttcccgctgctttcaatcgc 182  Q
    |||||||| || || ||||||||||||||||||  ||  | |||| ||||   |||| |||||||||||||| |||||||||||||||||||||| || |    
T  6997533 gacatagacacgcgctctggaattagaatcagactgcaccgatctgctttccgccattaaacgtcaatcaacgcgccgccttcccgctgctttcagtcac 6997632  T
Q  183 cactgtcatcatctgactcaccttgctgttctgtgttgtctgggaccatcaaaaacacttgggtcccactttttagag 260  Q
    ||||||||||||||||||||||||||| ||||||||||| | || ||||||| |||||||||||||||||||||||||    
T  6997633 cactgtcatcatctgactcaccttgctcttctgtgttgtttagggccatcaacaacacttgggtcccactttttagag 6997710  T

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Target: chr7; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 315 - 377
Target Start/End: Complemental strand, 44266548 - 44266486
Alignment:
Q  315 gtttcaggcttcgtgggtaattctctgctcactttagtctgccacttttgttgtgtttcatct 377  Q
    |||||||||||||||||| ||||||||||||||||| |||||||||||||| |||||||||||    
T  44266548 gtttcaggcttcgtgggtcattctctgctcactttaatctgccacttttgtcgtgtttcatct 44266486  T

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Target: chr2 (Bit Score: 123; Significance: 4e-63; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 83 - 261
Target Start/End: Original strand, 38502983 - 38503161
Alignment:
Q  83 gacatagagacacgatctggaattagaatcagagggcgtcaatcttcttttttccatcaaacgtcaatcaacacgccgccttcccgctgctttcaatcgc 182  Q
    |||||||| || || |||||||||||||||||| |||| | |||| |||| | |||||||||||||||| |||||| |||||||||||||||||||||||    
T  38502983 gacatagacacgcgctctggaattagaatcagacggcgccgatctgctttctgccatcaaacgtcaatcgacacgctgccttcccgctgctttcaatcgc 38503082  T
Q  183 cactgtcatcatctgactcaccttgctgttctgtgttgtctgggaccatcaaaaacacttgggtcccactttttagagg 261  Q
    |||||||||||| |||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||    
T  38503083 cactgtcatcatttgactcaccttgctgttctgtgttgtttgggaccatcaacaacacttgggtcccactttttagagg 38503161  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 320 - 377
Target Start/End: Original strand, 38503159 - 38503216
Alignment:
Q  320 aggcttcgtgggtaattctctgctcactttagtctgccacttttgttgtgtttcatct 377  Q
    ||||||||||||| ||||||   |||||| |||||||||||||||||||| |||||||    
T  38503159 aggcttcgtgggtcattctcaagtcacttcagtctgccacttttgttgtgattcatct 38503216  T

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Target: chr4 (Bit Score: 119; Significance: 1e-60; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 83 - 261
Target Start/End: Complemental strand, 46597126 - 46596948
Alignment:
Q  83 gacatagagacacgatctggaattagaatcagagggcgtcaatcttcttttttccatcaaacgtcaatcaacacgccgccttcccgctgctttcaatcgc 182  Q
    |||||||| || || |||||||||||||||||| |||| | |||| ||||   |||||||||||||||  |||||| |||||||||||||||||||||||    
T  46597126 gacatagacacgcgctctggaattagaatcagacggcgccgatctgctttccgccatcaaacgtcaattgacacgctgccttcccgctgctttcaatcgc 46597027  T
Q  183 cactgtcatcatctgactcaccttgctgttctgtgttgtctgggaccatcaaaaacacttgggtcccactttttagagg 261  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||    
T  46597026 cactgtcatcatctgactcaccttgctgttctgtgttgtttgggaccatcaacaacacttgggtcccactttttagagg 46596948  T

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Target: chr4; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 83 - 257
Target Start/End: Original strand, 6678897 - 6679071
Alignment:
Q  83 gacatagagacacgatctggaattagaatcagagggcgtcaatcttcttttttccatcaaacgtcaatcaacacgccgccttcccgctgctttcaatcgc 182  Q
    |||||||| || || |||||||||||||||||| |||| | |||| ||||   |||||||||||||||| ||| |  |||||||||||||||||||||||    
T  6678897 gacatagacacgcgctctggaattagaatcagacggcgccgatctgctttccgccatcaaacgtcaatcgacatgttgccttcccgctgctttcaatcgc 6678996  T
Q  183 cactgtcatcatctgactcaccttgctgttctgtgttgtctgggaccatcaaaaacacttgggtcccacttttta 257  Q
    |||||||||||||| |||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||    
T  6678997 cactgtcatcatctaactcaccttgctgttctgtgttgtttgggaccatcaacaacacttgggtcccacttttta 6679071  T

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Target: chr4; HSP #3
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 98 - 261
Target Start/End: Complemental strand, 22506047 - 22505884
Alignment:
Q  98 tctggaattagaatcagagggcgtcaatcttcttttttccatcaaacgtcaatcaacacgccgccttcccgctgctttcaatcgccactgtcatcatctg 197  Q
    |||||||||||||||||| |||| | |||| ||||   |||||||||||||||  ||| |  ||||||||| |||||||||||||||||||||||||||     
T  22506047 tctggaattagaatcagacggcgccgatctgctttccgccatcaaacgtcaattgacatgttgccttcccgttgctttcaatcgccactgtcatcatctt 22505948  T
Q  198 actcaccttgctgttctgtgttgtctgggaccatcaaaaacacttgggtcccactttttagagg 261  Q
    |||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||    
T  22505947 actcaccttgctgttctgtgttgtttgggaccatcaacaacacttgggtcccactttttagagg 22505884  T

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Target: chr4; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 320 - 377
Target Start/End: Original strand, 6679073 - 6679130
Alignment:
Q  320 aggcttcgtgggtaattctctgctcactttagtctgccacttttgttgtgtttcatct 377  Q
    ||||||||||||| |||||||| ||||||||||||||||||||||||||| |||||||    
T  6679073 aggcttcgtgggtcattctctggtcactttagtctgccacttttgttgtgattcatct 6679130  T

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Target: chr4; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 320 - 377
Target Start/End: Complemental strand, 22505886 - 22505829
Alignment:
Q  320 aggcttcgtgggtaattctctgctcactttagtctgccacttttgttgtgtttcatct 377  Q
    ||||||||||||| |||||||| ||||||||||||||||||||||||||| |||||||    
T  22505886 aggcttcgtgggtcattctctggtcactttagtctgccacttttgttgtgattcatct 22505829  T

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Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 83 - 197
Target Start/End: Original strand, 50959495 - 50959609
Alignment:
Q  83 gacatagagacacgatctggaattagaatcagagggcgtcaatcttcttttttccatcaaacgtcaatcaacacgccgccttcccgctgctttcaatcgc 182  Q
    |||||||| || || ||||||||||||||||||  ||| | |||| ||||   ||||||||| |||||| || ||| |||||||||||||||||||||      
T  50959495 gacatagacacgcgctctggaattagaatcagacagcgccgatctgctttccgccatcaaacatcaatcgacgcgctgccttcccgctgctttcaatcat 50959594  T
Q  183 cactgtcatcatctg 197  Q
    ||| |||||||||||    
T  50959595 caccgtcatcatctg 50959609  T

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Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 310 - 377
Target Start/End: Original strand, 50959606 - 50959676
Alignment:
Q  310 tctgcgtttcaggcttcgtgggtaattctctgctcac-tttagtctgcc-ac-ttttgttgtgtttcatct 377  Q
    ||||||||||||||||||||||| ||||||||||||| ||||||||||| || |||| |||||||||||||    
T  50959606 tctgcgtttcaggcttcgtgggtcattctctgctcacttttagtctgcctactttttattgtgtttcatct 50959676  T

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Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 320 - 377
Target Start/End: Complemental strand, 46596950 - 46596893
Alignment:
Q  320 aggcttcgtgggtaattctctgctcactttagtctgccacttttgttgtgtttcatct 377  Q
    ||||||| ||||| || ||||| ||||||||||||||||||||| ||||| |||||||    
T  46596950 aggcttcatgggtcatactctggtcactttagtctgccacttttcttgtgattcatct 46596893  T

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Target: chr5 (Bit Score: 107; Significance: 2e-53; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 83 - 261
Target Start/End: Original strand, 18380 - 18558
Alignment:
Q  83 gacatagagacacgatctggaattagaatcagagggcgtcaatcttcttttttccatcaaacgtcaatcaacacgccgccttcccgctgctttcaatcgc 182  Q
    |||||||| || || |||||||||||||||||| |||  | |||| ||||   |||||||||||||||| |||||| |||||||||||||||||||||||    
T  18380 gacatagacacgcgctctggaattagaatcagacggccccgatctgctttccgccatcaaacgtcaatcgacacgctgccttcccgctgctttcaatcgc 18479  T
Q  183 cactgtcatcatctgactcaccttgctgttctgtgttgtctgggaccatcaaaaacacttgggtcccactttttagagg 261  Q
    ||||||||||||| ||||||||| ||||||||||||||| ||||| |||||| ||||||||||||||||||||||||||    
T  18480 cactgtcatcatccgactcacctcgctgttctgtgttgtttgggatcatcaacaacacttgggtcccactttttagagg 18558  T

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Target: chr5; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 98 - 261
Target Start/End: Original strand, 21291782 - 21291945
Alignment:
Q  98 tctggaattagaatcagagggcgtcaatcttcttttttccatcaaacgtcaatcaacacgccgccttcccgctgctttcaatcgccactgtcatcatctg 197  Q
    |||||||||||||||||| |||  | |||| ||||   |||||||||||||||| ||| || ||||| || |||||||||||||||| ||||||||||||    
T  21291782 tctggaattagaatcagacggccccgatctgctttccgccatcaaacgtcaatcgacatgctgccttaccactgctttcaatcgccattgtcatcatctg 21291881  T
Q  198 actcaccttgctgttctgtgttgtctgggaccatcaaaaacacttgggtcccactttttagagg 261  Q
    |||||||||| ||||||||||||| ||||| |||||| ||||||||||||||||||||||||||    
T  21291882 actcaccttgttgttctgtgttgtttgggatcatcaacaacacttgggtcccactttttagagg 21291945  T

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Target: chr5; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 320 - 377
Target Start/End: Original strand, 21291943 - 21292000
Alignment:
Q  320 aggcttcgtgggtaattctctgctcactttagtctgccacttttgttgtgtttcatct 377  Q
    |||||||||||||||||||||| |||||||||||| |||||||||||||| |||||||    
T  21291943 aggcttcgtgggtaattctctggtcactttagtctaccacttttgttgtgattcatct 21292000  T

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Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 320 - 377
Target Start/End: Original strand, 18556 - 18613
Alignment:
Q  320 aggcttcgtgggtaattctctgctcactttagtctgccacttttgttgtgtttcatct 377  Q
    ||||||||||||| |||||||| || |||||||||||||||||||||||| |||||||    
T  18556 aggcttcgtgggtcattctctggtctctttagtctgccacttttgttgtgattcatct 18613  T

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Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 174 - 296
Target Start/End: Original strand, 28031522 - 28031644
Alignment:
Q  174 ttcaatcgccactgtcatcatctgactcaccttgctgttctgtgttgtctgggaccatcaaaaacacttgggtcccactttttagaggtcgtttggagat 273  Q
    |||||| |||||||  ||||| ||||||||||||||||| ||||| || ||||| |||||| |   | |||||||||||||| |||||| | | ||||||    
T  28031522 ttcaattgccactgcaatcatttgactcaccttgctgttttgtgtcgtttgggaacatcaacagtgcgtgggtcccacttttgagaggttgctaggagat 28031621  T
Q  274 ttatttgaagttgattgattttt 296  Q
    || ||| |||||||||| |||||    
T  28031622 ttctttaaagttgattggttttt 28031644  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 320 - 375
Target Start/End: Original strand, 43733852 - 43733907
Alignment:
Q  320 aggcttcgtgggtaattctctgctcactttagtctgccacttttgttgtgtttcat 375  Q
    ||||||||||||| |||||| | ||||||||||||||||| ||||||||| |||||    
T  43733852 aggcttcgtgggtcattctcaggtcactttagtctgccacgtttgttgtgattcat 43733907  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 223 - 261
Target Start/End: Original strand, 43733816 - 43733854
Alignment:
Q  223 tgggaccatcaaaaacacttgggtcccactttttagagg 261  Q
    |||||||||||| ||||||||||||||||||||||||||    
T  43733816 tgggaccatcaacaacacttgggtcccactttttagagg 43733854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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