View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1086_low_9 (Length: 377)
Name: NF1086_low_9
Description: NF1086
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1086_low_9 |
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Alignment Details
Target: chr6 (Bit Score: 175; Significance: 4e-94; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 57 - 235
Target Start/End: Complemental strand, 3225123 - 3224945
Alignment:
| Q |
57 |
catactggacaaagaacaagaagtgatggtgatgctatctctatttatggatcttccaatatttggattgatcatctttcactctctgaatgtgaggatg |
156 |
Q |
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| T |
3225123 |
catactggacaaagaacaagaagtgatggtgatgctatctctatttatggatcttccaatatttggattgatcatctttcactctctgaatgtgaggatg |
3225024 |
T |
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| Q |
157 |
gtcttgttgatgttatccaaggttctactggtatcacaatctcaaattgtcacatgacaaaacataatgatgtaagtaa |
235 |
Q |
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| T |
3225023 |
gtcttgttgatattatccaaggttctactggtatcacaatctcaaattgtcacatgacaaaacataatgatgtaagtaa |
3224945 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 255 - 340
Target Start/End: Complemental strand, 3224900 - 3224815
Alignment:
| Q |
255 |
aaaaaatgaaattttatatgatatttaatttctgcaaaatgtatatacatggcctacattacttaaaatttctgggtccgtctctg |
340 |
Q |
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| T |
3224900 |
aaaaaatgaaattttatatgatatttaatttctgcaaaatgtatatacatggcctacattacttaaaatttatgggtccgtctctg |
3224815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 68 - 234
Target Start/End: Original strand, 2045356 - 2045522
Alignment:
| Q |
68 |
aagaacaagaagtgatggtgatgctatctctatttatggatcttccaatatttggattgatcatctttcactctctgaatgtgaggatggtcttgttgat |
167 |
Q |
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| T |
2045356 |
aagaacaaggagtgatggtgatgctatctctgtctttggttcatcaaacatctggattgatcatatttccttatctaattgcgaggatggtcttgttgat |
2045455 |
T |
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| Q |
168 |
gttatccaaggttctactggtatcacaatctcaaattgtcacatgacaaaacataatgatgtaagta |
234 |
Q |
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| T |
2045456 |
gtcattcaaggctctactgcagtcaccatctcaaattgccacatgaccaaacataacgatgtaagta |
2045522 |
T |
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