View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10870_high_3 (Length: 246)
Name: NF10870_high_3
Description: NF10870
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10870_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 16 - 235
Target Start/End: Complemental strand, 42796517 - 42796298
Alignment:
| Q |
16 |
aatccaacaccggtactgtaaccatcatggagaaaattagcaccaccaccatatctatcaaagtaagcactttgaaaagccttaaccaacccaactccag |
115 |
Q |
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| T |
42796517 |
aatccaacaccagtactgtaaccatcatggagaaaattagcaccaccaccatatctatcaaagtaagcactttgaaaagccttaaccaacccaactccag |
42796418 |
T |
|
| Q |
116 |
caatagctcctaaacactgagccaccatgtacataattgctctgatcaaagacaccttacgagccaaaaatagcccaaatgtcactgctgggttaatgtg |
215 |
Q |
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| T |
42796417 |
caatagctcctaaacactgagccaccatgtacataattgctctgatcaaagacaccttacgagccaaaaatagcccaaatgtcactgctgggttaatgtg |
42796318 |
T |
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| Q |
216 |
accacctacaatatattcat |
235 |
Q |
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| T |
42796317 |
accacctacaatagattcat |
42796298 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 88 - 200
Target Start/End: Original strand, 40835288 - 40835400
Alignment:
| Q |
88 |
tgaaaagccttaaccaacccaactccagcaatagctcctaaacactgagccaccatgtacataattgctctgatcaaagacaccttacgagccaaaaata |
187 |
Q |
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|||||||||||||||| ||||| ||| || ||||||||||||||||| |||||||| | | ||||| ||||| |||||||| | |||| ||||| |
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| T |
40835288 |
tgaaaagccttaaccagtccaacaccacatattgctcctaaacactgagctaccatgtataatacagctctaatcaatgacaccttcctcgccagaaata |
40835387 |
T |
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| Q |
188 |
gcccaaatgtcac |
200 |
Q |
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| T |
40835388 |
gcccaaatgtcac |
40835400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 178 - 222
Target Start/End: Original strand, 35230376 - 35230420
Alignment:
| Q |
178 |
gccaaaaatagcccaaatgtcactgctgggttaatgtgaccacct |
222 |
Q |
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| T |
35230376 |
gccaaaaatagcccaaatgtgactgctggatttatgtgaccacct |
35230420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 190 - 222
Target Start/End: Original strand, 4482878 - 4482910
Alignment:
| Q |
190 |
ccaaatgtcactgctgggttaatgtgaccacct |
222 |
Q |
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| T |
4482878 |
ccaaatgtcactgctgggttaatgtgaccacct |
4482910 |
T |
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