View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10870_low_11 (Length: 234)
Name: NF10870_low_11
Description: NF10870
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10870_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 13 - 216
Target Start/End: Complemental strand, 31552045 - 31551842
Alignment:
| Q |
13 |
tgagaagaacccggtcggaccaagaatccaagttgagccggatgagccggtctatatcaaagagaagatgatccttaataatagatgaattagcaaaact |
112 |
Q |
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| T |
31552045 |
tgagaagaacccggtcggaccaagaatccaagttgagccggatgagccggtctatatcaaagagaagatgatccttaataatagacgaattagcaaaact |
31551946 |
T |
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| Q |
113 |
catagtgagagaatgcattttcttgtgaagagaacccttcataagaagcaatgaatgttttccaagaaggtttgatattgaaccggggtagctacattca |
212 |
Q |
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| T |
31551945 |
catagtgagagaatgcattttcttgtgaagagaacccttcataagaagcaatgaatgttttccaagaaggtttgatattgaaccggggtagctacattca |
31551846 |
T |
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| Q |
213 |
aaaa |
216 |
Q |
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|||| |
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| T |
31551845 |
aaaa |
31551842 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 109; Significance: 6e-55; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 20 - 216
Target Start/End: Complemental strand, 35472731 - 35472535
Alignment:
| Q |
20 |
aacccggtcggaccaagaatccaagttgagccggatgagccggtctatatcaaagagaagatgatccttaataatagatgaattagcaaaactcatagtg |
119 |
Q |
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| T |
35472731 |
aacccggtcggaccaagaatccaaattaagccgaataagccgatcaatatcaagaagaagatgatccttaataattgaggagttagcaaaactcatagta |
35472632 |
T |
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| Q |
120 |
agagaatgcattttcttgtgaagagaacccttcataagaagcaatgaatgttttccaagaaggtttgatattgaaccggggtagctacattcaaaaa |
216 |
Q |
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| T |
35472631 |
agcgaatgcattctcttatgaagagaacctttcataagaagcaaagagtgttttcccaaaaggttcgatattgaaccggggtaactacattcaaaaa |
35472535 |
T |
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