View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10870_low_2 (Length: 342)
Name: NF10870_low_2
Description: NF10870
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10870_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 19 - 332
Target Start/End: Complemental strand, 11228475 - 11228162
Alignment:
| Q |
19 |
atttataggatctccatctatcccctagtgtactcctcacccatttgattccagcagcatagtcaaactcaaaatgtttctaaaaatgtatttaaaggtc |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11228475 |
atttataggatctccatctatcccctagtgtactcctcacccatttgattccagcagcatagtcaaactcaaaatgtttctaaaaatgtatttaaaggtc |
11228376 |
T |
|
| Q |
119 |
aatattttgatataaaaggcacatcaacaaacnnnnnnnnnttaacaaagtcaaaataataacctcaatacactgccattgatctatactacatttttcg |
218 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
11228375 |
aatattttgatataaaaggcacatcaacaaacaaacaaaaattaacaaagtcaaaataataacctcgatacactgccattgatctatactacatttttcg |
11228276 |
T |
|
| Q |
219 |
gacatctcatcccacctttcaactgatataggacaataggctgactttttagcgatttggcctaagaacctcacaagtaagttagtaccattatcgtctc |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11228275 |
gacatctcatcccacctttcaactgatataggacaataggctgattttttagcaatttggcctaagaacctcacaagtaagttagtaccattatcgtctc |
11228176 |
T |
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| Q |
319 |
cttgtccccctttg |
332 |
Q |
| |
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||||||||| |||| |
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| T |
11228175 |
cttgtccccttttg |
11228162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 19 - 332
Target Start/End: Complemental strand, 13551997 - 13551685
Alignment:
| Q |
19 |
atttataggatctccatctatcccctagtgtactcctcacccatttgattccagcagcatagtcaaactcaaaatgtttctaaaaatgtatttaaaggtc |
118 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
13551997 |
atttataggatctccatctatccgctagtgtactcctcacccatttgattccagcagcatagtcaaactcaaaatgtttctagaaatgtatttaaaggtc |
13551898 |
T |
|
| Q |
119 |
aatattttgatataaaaggcacatcaacaaacnnnnnnnnnttaacaaagtcaaaataataacctcaatacactgccattgatctatactacatttttcg |
218 |
Q |
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||||||||||||||||| || ||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
13551897 |
aatattttgatataaaaagcgcatcaacaaacaaaaaaaa-ttaacaaagtcaaaatataaacctcaatacactgccattgatctatactacatttttcg |
13551799 |
T |
|
| Q |
219 |
gacatctcatcccacctttcaactgatataggacaataggctgactttttagcgatttggcctaagaacctcacaagtaagttagtaccattatcgtctc |
318 |
Q |
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|||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
13551798 |
gacatctcatcccatctttcaactgatataggacaatagactgactttttagcgatttggcctaagaacctcacaagtaagtttgtaccattatcgtctc |
13551699 |
T |
|
| Q |
319 |
cttgtccccctttg |
332 |
Q |
| |
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||||||||| |||| |
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| T |
13551698 |
cttgtccccttttg |
13551685 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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