View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10870_low_3 (Length: 309)
Name: NF10870_low_3
Description: NF10870
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10870_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 34 - 293
Target Start/End: Complemental strand, 758673 - 758414
Alignment:
| Q |
34 |
tcacacctaccaagtaatatatattttcttttctttttgattcctcttgttgatctgttttagtttatcacttcttatttcattcttctcatgaacatta |
133 |
Q |
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| T |
758673 |
tcacacctaccaagtaatatatattttcttttctttttgattcctcttgttgatctgttttagtttatcacttcttatttcattcttctcatgaacatta |
758574 |
T |
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| Q |
134 |
agattctagcataaatacatgttggaatgattgattaattaattaatttgattagcataactaagatccagcctccatgagtcatcataattaatatatt |
233 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
758573 |
agattctagcataaatacatgttggaatgattgattaattaattaatttgattagcataactaagatctagcctccatgagtcatcataattaatatatt |
758474 |
T |
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| Q |
234 |
aattattaacaacaaccttaatcattacaatttgtgatatcattaccaataacatactac |
293 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
758473 |
aattatcaacaacaaccttaatcattacaatttgtgatatcattaccaataacatactac |
758414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 242; Significance: 1e-134; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 36 - 293
Target Start/End: Original strand, 36988700 - 36988957
Alignment:
| Q |
36 |
acacctaccaagtaatatatattttcttttctttttgattcctcttgttgatctgttttagtttatcacttcttatttcattcttctcatgaacattaag |
135 |
Q |
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||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36988700 |
acacctaccaagtaatatatattttattttctttttaattcctcttgttgatctgttttagtttatcacttcttatttcattcttctcatgaacattaag |
36988799 |
T |
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| Q |
136 |
attctagcataaatacatgttggaatgattgattaattaattaatttgattagcataactaagatccagcctccatgagtcatcataattaatatattaa |
235 |
Q |
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| T |
36988800 |
attctagcataaatacatgttggaataattgattaattaattaatttgattagcataactaagatctagcctccatgagtcatcataattaatatattaa |
36988899 |
T |
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| Q |
236 |
ttattaacaacaaccttaatcattacaatttgtgatatcattaccaataacatactac |
293 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36988900 |
ttattaacaacaaccttaatcattacaatttgtgatatcattaccaataacatactac |
36988957 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 36 - 293
Target Start/End: Original strand, 37014139 - 37014396
Alignment:
| Q |
36 |
acacctaccaagtaatatatattttcttttctttttgattcctcttgttgatctgttttagtttatcacttcttatttcattcttctcatgaacattaag |
135 |
Q |
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||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37014139 |
acacctaccaagtaatatatattttattttctttttaattcctcttgttgatctgttttagtttatcacttcttatttcattcttctcatgaacattaag |
37014238 |
T |
|
| Q |
136 |
attctagcataaatacatgttggaatgattgattaattaattaatttgattagcataactaagatccagcctccatgagtcatcataattaatatattaa |
235 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
37014239 |
attctagcataaatacatgttggaataattgattaattaattaatttgattagcataactaagatctagcctccatgagtcatcataattaatatattaa |
37014338 |
T |
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| Q |
236 |
ttattaacaacaaccttaatcattacaatttgtgatatcattaccaataacatactac |
293 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37014339 |
ttattaacaacaaccttaatcattacaatttgtgatatcattaccaataacatactac |
37014396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 231 - 285
Target Start/End: Complemental strand, 36443693 - 36443639
Alignment:
| Q |
231 |
attaattattaacaacaaccttaatcattacaatttgtgatatcattaccaataa |
285 |
Q |
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||||||||||||||||||||||| | ||||||||||||||||||||||||||||| |
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| T |
36443693 |
attaattattaacaacaaccttagttattacaatttgtgatatcattaccaataa |
36443639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 48 - 118
Target Start/End: Complemental strand, 36443880 - 36443810
Alignment:
| Q |
48 |
taatatatattttcttttctttttgattcctcttgttgatctgttttagtttatcacttcttatttcattc |
118 |
Q |
| |
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||||||||||||||| |||||||| ||||| |||||||| ||| |||||||||||||||||| ||||||| |
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| T |
36443880 |
taatatatattttctcttctttttaattccctttgttgatttgtcttagtttatcacttcttacttcattc |
36443810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 97; Significance: 1e-47; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 37 - 153
Target Start/End: Complemental strand, 19181049 - 19180933
Alignment:
| Q |
37 |
cacctaccaagtaatatatattttcttttctttttgattcctcttgttgatctgttttagtttatcacttcttatttcattcttctcatgaacattaaga |
136 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||| ||||| |
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| T |
19181049 |
cacctaccaagtaatatatattttcttttctttttaattcctcttgttgatctgttttagattatcacttcttacttcattcttctcatgaacactaaga |
19180950 |
T |
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| Q |
137 |
ttctagcataaatacat |
153 |
Q |
| |
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|||||||||| |||||| |
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| T |
19180949 |
ttctagcatacatacat |
19180933 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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