View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10870_low_5 (Length: 274)
Name: NF10870_low_5
Description: NF10870
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10870_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 252; Significance: 1e-140; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 1 - 256
Target Start/End: Original strand, 33942745 - 33943000
Alignment:
| Q |
1 |
aagaagaagggaagtcggaggagataaggccgttccagagagagtcatcagaggaaaggcggtgaaggaggtggcaagagattgagatgcaacagagatc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33942745 |
aagaagaagggaagtcggaggagataaggccgttccagagagagtcatcagaggaaaggcggtgaaggaggtggcaagagattgagatgcaacagagatc |
33942844 |
T |
|
| Q |
101 |
cttgtagctcaagctgcttttttcaattccgatttccagaattctgctccatagttcttcagggagagatgacattttgggtgaattcaacaaattatcc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
33942845 |
cttgtagctcaagctgcttttttcaattccgatttccagaattctgctccatagttcttcagggagagatgacattttgggtgaattcaacaaagtatcc |
33942944 |
T |
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| Q |
201 |
tattgtctttttccacaccaagttcaacgttaaattcaccaaacaatacatacatt |
256 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33942945 |
tattgtctttttccacaccaagttcaacgttaaattcaccaaacaatacatacatt |
33943000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 178
Target Start/End: Original strand, 33934564 - 33934741
Alignment:
| Q |
1 |
aagaagaagggaagtcggaggagataaggccgttccagagagagtcatcagaggaaaggcggtgaaggaggtggcaagagattgagatgcaacagagatc |
100 |
Q |
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|||||||||||||||||||||||| ||||| |||||||||||| || ||| ||| ||||||||||||||| |||| |||||||||||||| ||||| || |
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| T |
33934564 |
aagaagaagggaagtcggaggagagaaggcggttccagagagaatcttcaacggagaggcggtgaaggaggcggcaggagattgagatgcagcagaggtc |
33934663 |
T |
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| Q |
101 |
cttgtagctcaagctgcttttttcaattccgatttccagaattctgctccatagttcttcagggagagatgacatttt |
178 |
Q |
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||||||||||| | || | || ||||||||||| |||||| || |||||||||| |||||||| |||||||| |
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| T |
33934664 |
tttgtagctcaaaccgcaatcttggattccgatttcgagaattttggtccatagttcgattgggagagacgacatttt |
33934741 |
T |
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