View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10870_low_6 (Length: 265)
Name: NF10870_low_6
Description: NF10870
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10870_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 221; Significance: 1e-122; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 244
Target Start/End: Original strand, 20994088 - 20994332
Alignment:
| Q |
1 |
cattatgtcttgtaggagcgtatggtgcttttctcgttgcttgctatgacaacgaacgcaacgaatttcaaagtattgtcaagctaggtgagtgttttat |
100 |
Q |
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| T |
20994088 |
cattatgtcttgtaggagtgtatggtgcttttctcgttgcttgctatgacaacgaacgcaacgaatttcaaagtattgtcaggctaggtgagcgttttat |
20994187 |
T |
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| Q |
101 |
gctgtatagcgttcttttgtttattaaacttaattttctgacttattcttcatgttat-gtgggcagcaactggattcaaagagcaagagcttaaagaac |
199 |
Q |
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| T |
20994188 |
gctgtatagcgttattttgtttattaaacttaattttctgacttattcttcatgttatggtgggcagcaactggattcaaagagcaagagcttaaagaac |
20994287 |
T |
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| Q |
200 |
gttctactatccttcgctctaaagtgattcccaaaccaaaggtcc |
244 |
Q |
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| T |
20994288 |
gttctactatccttcgctctaaagtgattcccaaaccaaaggtcc |
20994332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 6 - 149
Target Start/End: Original strand, 21004233 - 21004376
Alignment:
| Q |
6 |
tgtcttgtaggagcgtatggtgcttttctcgttgcttgctatgacaacgaacgcaacgaatttcaaagtattgtcaagctaggtgagtgttttatgctgt |
105 |
Q |
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| T |
21004233 |
tgtcttgtaggagtgtatggtgcttttctccttgcttgctatgacaacgataatgaggagtttcaaagcatttgtaagataggtgagcgttttatgttgt |
21004332 |
T |
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| Q |
106 |
atagcgttcttttgtttattaaacttaattttctgacttattct |
149 |
Q |
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| T |
21004333 |
atagagctcttttgtttattgaacttaattttctcactttttct |
21004376 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 157 - 242
Target Start/End: Original strand, 21004406 - 21004491
Alignment:
| Q |
157 |
atgtgggcagcaactggattcaaagagcaagagcttaaagaacgttctactatccttcgctctaaagtgattcccaaaccaaaggt |
242 |
Q |
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| T |
21004406 |
atgtgggtaggaactggattcaaagaagaagtgcttgaagaacgttctactagccttcgctctaaagtgattcccaaaccaaaggt |
21004491 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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