View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10871_high_2 (Length: 276)
Name: NF10871_high_2
Description: NF10871
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10871_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 57 - 266
Target Start/End: Complemental strand, 30342293 - 30342084
Alignment:
| Q |
57 |
tgaattaatacgaatggtaatggaattattcattgcaagttggagtgagaagatatcagggttcaaggtctttatgcaaacctaccaggacacattctct |
156 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30342293 |
tgaattaatacgaatggtaatggaattattcattgcaagttggagtgagaagatatcagggttcaaggtctttatgcaaacctaccaggacacattctct |
30342194 |
T |
|
| Q |
157 |
aggtgctacgggtgctgtcatttatcactcaagagatgcatcacccttgactgccaagacaacatagtaatatggtatatgccatattttttgtaccttg |
256 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30342193 |
aggtgctacgggtgctgtcatttatcactcaagagatgcatcacccttgactgccaagacaacatagtaatatggtatatgccatattttttgtaccttg |
30342094 |
T |
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| Q |
257 |
ttactgatga |
266 |
Q |
| |
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|||||||||| |
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| T |
30342093 |
ttactgatga |
30342084 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 57 - 266
Target Start/End: Complemental strand, 23918051 - 23917842
Alignment:
| Q |
57 |
tgaattaatacgaatggtaatggaattattcattgcaagttggagtgagaagatatcagggttcaaggtctttatgcaaacctaccaggacacattctct |
156 |
Q |
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||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23918051 |
tgaattaatacgaatggtattggaattattcattgcaagttagagtgagaagatatcagggttcaaggtctttatgcaaacctaccaggacacattctct |
23917952 |
T |
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| Q |
157 |
aggtgctacgggtgctgtcatttatcactcaagagatgcatcacccttgactgccaagacaacatagtaatatggtatatgccatattttttgtaccttg |
256 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
23917951 |
aggtgctacgggtgctttcatttatcactcaagagatgcatcacccttgactgccaagacaacatagtaatatggtatatgacatattttttgtaccttg |
23917852 |
T |
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| Q |
257 |
ttactgatga |
266 |
Q |
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|||||||||| |
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| T |
23917851 |
ttactgatga |
23917842 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 57 - 266
Target Start/End: Original strand, 18987472 - 18987681
Alignment:
| Q |
57 |
tgaattaatacgaatggtaatggaattattcattgcaagttggagtgagaagatatcagggttcaaggtctttatgcaaacctaccaggacacattctct |
156 |
Q |
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|
||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18987472 |
tgaattaatacgaatggtattggaattattcattgcaagttagagtgagaagatatcagggttcaaggtctttatgcaaacctaccaggacacattctct |
18987571 |
T |
|
| Q |
157 |
aggtgctacgggtgctgtcatttatcactcaagagatgcatcacccttgactgccaagacaacatagtaatatggtatatgccatattttttgtaccttg |
256 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||| ||||||| |
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| T |
18987572 |
aggtgctacgggtgctatcatttatcactcaagagatgcatcacccttgactgccaagacaacatagtaatatagtatatgacatattttttataccttg |
18987671 |
T |
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| Q |
257 |
ttactgatga |
266 |
Q |
| |
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|||||||||| |
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| T |
18987672 |
ttactgatga |
18987681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 75; Significance: 1e-34; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 57 - 177
Target Start/End: Complemental strand, 3882027 - 3881903
Alignment:
| Q |
57 |
tgaattaatacgaatggtaatggaattattcattgcaagttggagtgagaagatatc---agggttc-aaggtctttatgcaaacctaccaggacacatt |
152 |
Q |
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|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||| | ||||||| ||||||||||||||||||| ||||||||| |
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| T |
3882027 |
tgaattaacacgaatggtaatggaattattcattgcaagttggagtgagaagataacaggagggttcttctgtctttatgcaaacctaccgggacacatt |
3881928 |
T |
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| Q |
153 |
ctctaggtgctacgggtgctgtcat |
177 |
Q |
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|||||| |||||||||||||||||| |
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| T |
3881927 |
ctctagatgctacgggtgctgtcat |
3881903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 135 - 174
Target Start/End: Complemental strand, 3880985 - 3880946
Alignment:
| Q |
135 |
aacctaccaggacacattctctaggtgctacgggtgctgt |
174 |
Q |
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||||||| ||||||||||||||||||||||||||||||| |
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| T |
3880985 |
aacctactgggacacattctctaggtgctacgggtgctgt |
3880946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 57; Significance: 7e-24; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 210 - 266
Target Start/End: Original strand, 34038245 - 34038301
Alignment:
| Q |
210 |
ccaagacaacatagtaatatggtatatgccatattttttgtaccttgttactgatga |
266 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34038245 |
ccaagacaacatagtaatatggtatatgccatattttttgtaccttgttactgatga |
34038301 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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