View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10871_low_1 (Length: 366)
Name: NF10871_low_1
Description: NF10871
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10871_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 325; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 1 - 341
Target Start/End: Complemental strand, 56278145 - 56277805
Alignment:
| Q |
1 |
ttgaagtcaaaataatcttcaagagaatcaagacaccagacatgaagaccttgttctgatacctgaacataatgaagccttccttcatattctccaatgc |
100 |
Q |
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| T |
56278145 |
ttgaagtcaaaataatcttcaagagaatcaagacaccagacatgaagaccttgttctgatacctgaacataatgaagccttccttcatattctccaatgc |
56278046 |
T |
|
| Q |
101 |
aagcttgagggacggtcctaaactcacatgcaggaacaggtactgaaatcatcaaagacagttccttttcaagattaaaggtgatgatttgatcaccttc |
200 |
Q |
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| T |
56278045 |
aagcttgagggacggtcctaaactcacatgccggaacaggtactgaaatcatcaaagacagttccttttcaacattaaaggtgatgatttgatcaccttc |
56277946 |
T |
|
| Q |
201 |
tgtaagccaatgcaagacacctcctatgtataaccctttgtttttaatcaaaacataattacagtcgcatatctcattggatttcttccaagctttggtt |
300 |
Q |
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| T |
56277945 |
tgtaagccaatgcaagacacctcctatgtataaccctttgtttttaatcaaaccataattacagtcgcatgtctcattggatttcttccaagctttggtt |
56277846 |
T |
|
| Q |
301 |
tctgaggagtacacttcaaatgtgaagtagaacgattcatc |
341 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |
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| T |
56277845 |
tctgaggagtacacttcaaatgtgaagtagaacgattcatc |
56277805 |
T |
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