View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10871_low_12 (Length: 219)
Name: NF10871_low_12
Description: NF10871
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10871_low_12 |
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| [»] scaffold0864 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 130; Significance: 2e-67; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 13 - 178
Target Start/End: Complemental strand, 5264252 - 5264087
Alignment:
| Q |
13 |
cataggacaaaaggttgtgccagtgttctaccatttagaaccatctgaagtgcgtcatcagataggagagtttgaaatatcttttcaaagtcttttgaac |
112 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| |||||||||| |
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| T |
5264252 |
cataggacaaaaggttgtgccattgttctaccatttagaaccatctgaagtgcgtcatcagacaggagagtttggaatatcttttcaaaatcttttgaac |
5264153 |
T |
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| Q |
113 |
aaaatttcaaaagaggaggagttggtgcaaagttggagagaggctcttcgtcagacagctagcata |
178 |
Q |
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| T |
5264152 |
aaaatttcaatcgagaaggaattggtgcaaagttggagagaggctcttcgtcaggcagctagcata |
5264087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 13 - 200
Target Start/End: Complemental strand, 5331780 - 5331593
Alignment:
| Q |
13 |
cataggacaaaaggttgtgccagtgttctaccatttagaaccatctgaagtgcgtcatcagataggagagtttgaaatatcttttcaaagtcttttgaac |
112 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||| |||| || || ||||||||| |||||||| |
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| T |
5331780 |
cataggactaaaggttgtgccagtgttctaccatttagaaccatctaaagtgcgtcatcagacaggagattttggaaaattatttcaaagttttttgaac |
5331681 |
T |
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| Q |
113 |
aaaatttcaaaagaggaggagttggtgcaaagttggagagaggctcttcgtcagacagctagcatagcagggtttaaaatacccaagt |
200 |
Q |
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| T |
5331680 |
aaaatttcaaacgaggagcaattggtgcaaagttggagagaggctcttcgtcatgcagctaacataaaagggtttgaaatactcaagt |
5331593 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 13 - 163
Target Start/End: Complemental strand, 5184860 - 5184710
Alignment:
| Q |
13 |
cataggacaaaaggttgtgccagtgttctaccatttagaaccatctgaagtgcgtcatcagataggagagtttgaaatatcttttcaaagtcttttgaac |
112 |
Q |
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| T |
5184860 |
cataggacaagttgttgttccagtgttctaccatgtagacccctctgaagtacgtcatcagacaggcgagtttggaatagcttttcaaagtcttttgaac |
5184761 |
T |
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| Q |
113 |
aaaatttcaaaagaggaggagttggtgcaaagttggagagaggctcttcgt |
163 |
Q |
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||||||| ||| |||||||| ||||||| | |||||||||||||||||||| |
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| T |
5184760 |
aaaattttaaacgaggaggaattggtgctacgttggagagaggctcttcgt |
5184710 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 25 - 187
Target Start/End: Original strand, 5393227 - 5393389
Alignment:
| Q |
25 |
ggttgtgccagtgttctaccatttagaaccatctgaagtgcgtcatcagataggagagtttgaaatatcttttcaaagtcttttgaacaaaatttcaaaa |
124 |
Q |
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|||||| || |||||||||||| ||| || ||||||||||| |||||| ||||||||||| |||||||||||||||| |||||||||||| |||||| |
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| T |
5393227 |
ggttgttccggtgttctaccatgtagcccctactgaagtgcgttatcagaaaggagagtttggaatatcttttcaaagttttttgaacaaaacttcaaac |
5393326 |
T |
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| Q |
125 |
gaggaggagttggtgcaaagttggagagaggctcttcgtcagacagctagcatagcagggttt |
187 |
Q |
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| T |
5393327 |
aaggtggaattagagctaagttggagagcagctcttcgtcgggcagctagcatagcagggttt |
5393389 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 13 - 187
Target Start/End: Original strand, 5444204 - 5444378
Alignment:
| Q |
13 |
cataggacaaaaggttgtgccagtgttctaccatttagaaccatctgaagtgcgtcatcagataggagagtttgaaatatcttttcaaagtcttttgaac |
112 |
Q |
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|||||||||| |||||||||||||||||||| | |||| || |||||||||||| ||| || |||| |||||| |||| |||||||| |||||||||| |
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| T |
5444204 |
cataggacaagtggttgtgccagtgttctaccgtgtagatccctctgaagtgcgtaatccgagaggaaagtttggaatagcttttcaacgtcttttgaag |
5444303 |
T |
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| Q |
113 |
aaaatttcaaaagaggaggagttggtgcaaagttggagagaggctcttcgtcagacagctagcatagcagggttt |
187 |
Q |
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||| || ||||| ||||| | ||||||| |||||||| | ||||||||||| || |||| | ||| ||||||||| |
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| T |
5444304 |
aaagttccaaaaaaggagaaattggtgctaagttggaaaaaggctcttcgtgaggcagcaaacatcgcagggttt |
5444378 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 25 - 163
Target Start/End: Original strand, 5394456 - 5394594
Alignment:
| Q |
25 |
ggttgtgccagtgttctaccatttagaaccatctgaagtgcgtcatcagataggagagtttgaaatatcttttcaaagtcttttgaacaaaatttcaaaa |
124 |
Q |
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|||||| ||||||||||||||| |||| || ||||||||||| |||||| ||| ||||||| || | ||| ||||||||||||||| ||||| ||| |
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| T |
5394456 |
ggttgttccagtgttctaccatgtagatccctctgaagtgcgcaatcagaaaggtgagtttggaagggcgtttgaaagtcttttgaacagaattttaaac |
5394555 |
T |
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| Q |
125 |
gaggaggagttggtgcaaagttggagagaggctcttcgt |
163 |
Q |
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|||| ||| |||| || || ||||| ||||||||||||| |
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| T |
5394556 |
gaggtggaattggcgctaaattggaaagaggctcttcgt |
5394594 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 86
Target Start/End: Original strand, 5093048 - 5093108
Alignment:
| Q |
26 |
gttgtgccagtgttctaccatttagaaccatctgaagtgcgtcatcagataggagagtttg |
86 |
Q |
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| T |
5093048 |
gttgtgccagtgttctacgatgtagatccctctgaagtacgtcaccagaaaggcgagtttg |
5093108 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0864 (Bit Score: 73; Significance: 2e-33; HSPs: 2)
Name: scaffold0864
Description:
Target: scaffold0864; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 13 - 109
Target Start/End: Original strand, 4517 - 4613
Alignment:
| Q |
13 |
cataggacaaaaggttgtgccagtgttctaccatttagaaccatctgaagtgcgtcatcagataggagagtttgaaatatcttttcaaagtcttttg |
109 |
Q |
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| T |
4517 |
cataggacaaaaggttgtgcctgtgttttaccatttagaaccatctgaagtgcgccatcagacaggagagtttggagtatcttttcaaagtcttttg |
4613 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0864; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 134 - 200
Target Start/End: Original strand, 4680 - 4746
Alignment:
| Q |
134 |
ttggtgcaaagttggagagaggctcttcgtcagacagctagcatagcagggtttaaaatacccaagt |
200 |
Q |
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| T |
4680 |
ttggtgcaaaattggagagaggatcttcgtcaggcagctagcattgcagggtttgaaatactcaagt |
4746 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 69; Significance: 4e-31; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 13 - 109
Target Start/End: Complemental strand, 22589114 - 22589018
Alignment:
| Q |
13 |
cataggacaaaaggttgtgccagtgttctaccatttagaaccatctgaagtgcgtcatcagataggagagtttgaaatatcttttcaaagtcttttg |
109 |
Q |
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||||||||||||||||||| | |||||||||||||||||||||||||||||||| ||||||| ||||||||||| ||||||||||| ||||||||| |
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| T |
22589114 |
cataggacaaaaggttgtgtctgtgttctaccatttagaaccatctgaagtgcgccatcagacaggagagtttggaatatcttttcttagtcttttg |
22589018 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 145 - 200
Target Start/End: Complemental strand, 22588925 - 22588870
Alignment:
| Q |
145 |
ttggagagaggctcttcgtcagacagctagcatagcagggtttaaaatacccaagt |
200 |
Q |
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||||| |||||||||||||||| ||||||||| ||||||||| |||||| ||||| |
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| T |
22588925 |
ttggatagaggctcttcgtcaggtagctagcattgcagggtttgaaatactcaagt |
22588870 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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