View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10871_low_6 (Length: 266)
Name: NF10871_low_6
Description: NF10871
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10871_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 1 - 258
Target Start/End: Original strand, 3810768 - 3811025
Alignment:
| Q |
1 |
gcattgtggtgcatacttgctgcttacgtaacacctgtctttatcatacctcacacaattcaccctctacttggttggatcctgtattttcttggttctt |
100 |
Q |
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| T |
3810768 |
gcattgtggtgcatacttgctgcttacgtaacaccagtctttatcatacctcacacaattcaccctctacttggttggatcctgtattttcttggttctt |
3810867 |
T |
|
| Q |
101 |
ttgcattttgctcaattgcaattaatatctttcttctaccaatgttaccagttttggtaccttggcttgggattcttggagtcctaatggttatggcatt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3810868 |
ttgcattttgctcaattgcaattaatatctttcttctaccaatgttaccagttttggtaccttggcttgggattcttggagtcctaatggttatggcatt |
3810967 |
T |
|
| Q |
201 |
tccttggtatcctgatggaatagtaagagctatgtctgtgtttggctatgcattctgt |
258 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3810968 |
tccttggtatcctgatggaatagtaagagctatgtctgtgtttggctatgcattctgt |
3811025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 130 - 260
Target Start/End: Complemental strand, 41672655 - 41672525
Alignment:
| Q |
130 |
tttcttctaccaatgttaccagttttggtaccttggcttgggattcttggagtcctaatggttatggcatttccttggtatcctgatggaatagtaagag |
229 |
Q |
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|||||||| ||| ||||||| ||| || | || ||| |||| ||| ||||||| |||| || ||||| |||||||||||||| ||||| ||||||||| |
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| T |
41672655 |
tttcttcttccagtgttaccggttctgatgccgtggtttggtattattggagttttaattgtcatggcgtttccttggtatccggatggggtagtaagag |
41672556 |
T |
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| Q |
230 |
ctatgtctgtgtttggctatgcattctgtgc |
260 |
Q |
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|| | | ||||||||| |||||||| ||||| |
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| T |
41672555 |
ctttatgtgtgtttggttatgcattttgtgc |
41672525 |
T |
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