View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10871_low_7 (Length: 251)
Name: NF10871_low_7
Description: NF10871
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10871_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 245
Target Start/End: Complemental strand, 4030002 - 4029758
Alignment:
| Q |
1 |
cggtcgtggtaacaattacaaagcccctgaggctcgcgtacctggttgtagaccaacacagaaatgggatgtatactcattaggtgttgttttgcttgaa |
100 |
Q |
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| T |
4030002 |
cggtcgtggtaacaattacaaagcccctgaggctcgcgtacctggttgtagaccaacacagaaatgggatgtatactcattaggtgttgttttgcttgaa |
4029903 |
T |
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| Q |
101 |
ttgttaaccggtaaatctactgaatcttctcccacatcggcgtcatcatcggcttctgttgaagtttcagatttggtaaggtgggtgagaaatgggttcg |
200 |
Q |
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| T |
4029902 |
ttgttaaccggtaaatctactgaatcttctcccacatcggcgtcatcatcggcttctgttgaagtttcagatttggtaaggtgggtgagaaatgggttcg |
4029803 |
T |
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| Q |
201 |
atcaagaaagtccattatctgaaatggttgatccatctctgctac |
245 |
Q |
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| T |
4029802 |
atcaagaaagtccattatctgaaatggttgatccatctttgctac |
4029758 |
T |
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Target: chr7 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 147 - 237
Target Start/End: Original strand, 25885428 - 25885518
Alignment:
| Q |
147 |
catcggcttctgttgaagtttcagatttggtaaggtgggtgagaaatgggttcgatcaagaaagtccattatctgaaatggttgatccatc |
237 |
Q |
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| T |
25885428 |
catcgacttctgtcgaagtgcctgacttggtaaggtgggtaaagaaagggtttgaacaagaaagccctttatctgaaatggttgatccatc |
25885518 |
T |
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