View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10871_low_9 (Length: 236)
Name: NF10871_low_9
Description: NF10871
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10871_low_9 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 7667683 - 7667905
Alignment:
| Q |
1 |
cgataaagacactcacaaatcgcaggaccgagtttaacattagccggtctcaaaagtcaactttccagccaacagttcgccgttatggtcgcaagttcag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7667683 |
cgataaagacactcacaaatcgcaggactgagtttaacattagccggtctcaaaagtcaactttccagccaacagttcgccgttatggtcgcaagttcag |
7667782 |
T |
|
| Q |
101 |
ttgtggaaataacagtgaagacattgagattatgtgaaagaagaacaaacaacatatcttccctagtacaccataaaaatacatcttgtacagaaatatt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
7667783 |
ttgtggaaataacagtgaagacattgagattatgtgaaagaagaacaaacaacatatcttcccttgtacaccataaaaatacatcttgtacagaaatatt |
7667882 |
T |
|
| Q |
201 |
gcaacttttaaatataagaaaat |
223 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
7667883 |
gcaacttttaaatataagaaaat |
7667905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 2 - 223
Target Start/End: Original strand, 7087939 - 7088150
Alignment:
| Q |
2 |
gataaagacactcacaaatcgcaggaccgagtttaacattagccggtctcaaaagtcaactttccagccaacagttcgccgttatggtcgcaagttcagt |
101 |
Q |
| |
|
|||||||||||||| || ||||||||| ||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7087939 |
gataaagacactcataa-tcgcaggactgagtttaacattagccggtctcagaagtcaacgttccagccaacagttcgccgttatggtcgcaagttcagt |
7088037 |
T |
|
| Q |
102 |
tgtggaaataacagtgaagacattgagattatgtgaaagaagaacaaacaacatatcttccctagtacaccataaaaatacatcttgtacagaaatattg |
201 |
Q |
| |
|
|||||||| |||||||||||||||||||||||| ||||||| |||||| ||||||| |||||||||||||||||| ||||||||||||||||| |
|
|
| T |
7088038 |
tgtggaaa------tgaagacattgagattatgtgaaataagaaca---aacatagcttcccttgtacaccataaaaatacaccttgtacagaaatattg |
7088128 |
T |
|
| Q |
202 |
caacttttaaatataagaaaat |
223 |
Q |
| |
|
|||||||||| ||||||||||| |
|
|
| T |
7088129 |
caacttttaattataagaaaat |
7088150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University