View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10872_low_1 (Length: 349)
Name: NF10872_low_1
Description: NF10872
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10872_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 101 - 336
Target Start/End: Complemental strand, 40561934 - 40561699
Alignment:
| Q |
101 |
tatacggcatgcacggggacagtaatttagtatgccccccaaataatgccatgctaccttttctgtacaagtattattgttcttaactgcatatggaaag |
200 |
Q |
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| T |
40561934 |
tatacggcatgcacggggacagtaatttagtatgccccccaaataatgcaatgctaccttttctgtacaagtattattgttcttaactgcatatggaaag |
40561835 |
T |
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| Q |
201 |
tggtccatgaaagtatgatgttttcggtatttatctggttaaaagtatatatagctgagggagtcccccacacccttttcaaatgctattctcgtatagt |
300 |
Q |
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| T |
40561834 |
tggtccatgaaagtatgatgttttcggtatttatctggttaaaagtatatatagctgagggagtcccccacacccttttcaaataccattctcgtatagt |
40561735 |
T |
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| Q |
301 |
caatcaatccccaaaaacatgagtctgtctctgctc |
336 |
Q |
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| T |
40561734 |
caatcaatccccaaaaacatgagtctgtctctgctc |
40561699 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 16 - 93
Target Start/End: Complemental strand, 40562039 - 40561962
Alignment:
| Q |
16 |
cacaagttagcattaccttaattaaaatgatttcctctattaataattctttcatccattctcccttaaacacttctg |
93 |
Q |
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| T |
40562039 |
cacaagttagcattaccttaattaaaatgattttctctattaataattctttcatccattctcccttaaacacttctg |
40561962 |
T |
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