View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10872_low_3 (Length: 247)
Name: NF10872_low_3
Description: NF10872
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10872_low_3 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 3 - 232
Target Start/End: Complemental strand, 14448503 - 14448274
Alignment:
| Q |
3 |
gttgcttctagagagtgctaattagtagggtcgatctaaaggtcaagcagttcaaacaagagcctcaaaattttggatgaaaaaaggccgcnnnnnnntt |
102 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| |||||||||||||||| || |
|
|
| T |
14448503 |
gttgcttctagagagtgctaattagtagggtcgatccaaaggtcaagcagttcagacaagagcctcaaaattttagatgaaaaaaggccgcaaaaaaatt |
14448404 |
T |
|
| Q |
103 |
taatttagttataaatataacgtatggaaaatgaattatagatatttatatagcttaattggtaattgaaaaggcctaaaatactcttgctcgttcatgg |
202 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14448403 |
taatttagttataaatataaagtatggaaaatgaattatagatatttatatagcttaattggtaattgaaaaggcctaaaatactcttgctcgttcatgg |
14448304 |
T |
|
| Q |
203 |
gtacaaatcttgaactctacctaatttatt |
232 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
14448303 |
gtacaaatcttgaactctacctaatttatt |
14448274 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 146 - 187
Target Start/End: Complemental strand, 7678624 - 7678583
Alignment:
| Q |
146 |
atttatatagcttaattggtaattgaaaaggcctaaaatact |
187 |
Q |
| |
|
||||||| ||| |||||||||||||||||||||||||||||| |
|
|
| T |
7678624 |
atttataaagcctaattggtaattgaaaaggcctaaaatact |
7678583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 191
Target Start/End: Original strand, 33417474 - 33417533
Alignment:
| Q |
131 |
aaatgaattatagatatttatatagcttaattggtaattgaaaaggcctaaaatactcttg |
191 |
Q |
| |
|
|||| |||||| ||||||| ||||||||||||||| | |||||||||||||||||| |||| |
|
|
| T |
33417474 |
aaataaattattgatatttgtatagcttaattggt-actgaaaaggcctaaaatacccttg |
33417533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University