View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10873_high_4 (Length: 253)
Name: NF10873_high_4
Description: NF10873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10873_high_4 |
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Alignment Details
Target: chr7 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 18 - 245
Target Start/End: Complemental strand, 36725135 - 36724906
Alignment:
| Q |
18 |
cctatagaatatgtgttaatgaaattgctaataacacccatttgcatttaccagatcattggaatctagtttggaaactcaaagttccacctaaaataaa |
117 |
Q |
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| T |
36725135 |
cctatagaatatgtgttaatgaaattgctaataacacctatttgcatttactggatcattggaatctagtttggaaactcaaagttccacctaaaataaa |
36725036 |
T |
|
| Q |
118 |
aaatcttgtttggcgt--gtgtcgttgttgttttcatacatgagcacgcctaagtagtaaatgggttcattgtccaattgattgtgtaatatgtggaagt |
215 |
Q |
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|||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36725035 |
aaatcttgtttggcgtgtgtgtcgttgctgttttcatacatgagcacgcctaagtagtaaatgggttcattgtccaattgattgtgtaatatgtggaagt |
36724936 |
T |
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| Q |
216 |
aattatgaggatgatattcatgttcttctc |
245 |
Q |
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| T |
36724935 |
aattatgaggatggcattcatgttcttctc |
36724906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 143 - 245
Target Start/End: Original strand, 716721 - 716823
Alignment:
| Q |
143 |
ttgttttcatacatgagcacgcctaagtagtaaatgggttcattgtccaattgattgtgtaatatgtggaagtaattatgaggatgatattcatgttctt |
242 |
Q |
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|||||||| |||||||||| ||||| ||||| || ||||||||||||||| ||||||||||| |||| ||||||||||||||| |||||||||||| |
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| T |
716721 |
ttgttttccaacatgagcacacctaattagtagataggttcattgtccaatagattgtgtaatgtgtgaaagtaattatgaggaaatcattcatgttctt |
716820 |
T |
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| Q |
243 |
ctc |
245 |
Q |
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||| |
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| T |
716821 |
ctc |
716823 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 18 - 120
Target Start/End: Original strand, 8266680 - 8266782
Alignment:
| Q |
18 |
cctatagaatatgtgttaatgaaattgctaataacacccatttgcatttaccagatcattggaatctagtttggaaactcaaagttccacctaaaataaa |
117 |
Q |
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|||||||||||||||| | ||||||||||||||| | ||||||||| ||||| || ||| ||| ||||||||||||||||||| | |||||| ||||| |
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| T |
8266680 |
cctatagaatatgtgtaagtgaaattgctaataattctcatttgcatataccatgtcgttgaaatttagtttggaaactcaaagtcctacctaagataaa |
8266779 |
T |
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| Q |
118 |
aaa |
120 |
Q |
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||| |
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| T |
8266780 |
aaa |
8266782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 198 - 239
Target Start/End: Original strand, 12226075 - 12226116
Alignment:
| Q |
198 |
tgtgtaatatgtggaagtaattatgaggatgatattcatgtt |
239 |
Q |
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| T |
12226075 |
tgtgtaatttgtggaaataattatgaggatgacattcatgtt |
12226116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 84 - 132
Target Start/End: Complemental strand, 33907552 - 33907504
Alignment:
| Q |
84 |
tagtttggaaactcaaagttccacctaaaataaaaaatcttgtttggcg |
132 |
Q |
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|||| ||||| |||||||| |||||||||||||||||||| ||||||| |
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| T |
33907552 |
tagtgtggaagctcaaagtgccacctaaaataaaaaatctaatttggcg |
33907504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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