View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10873_low_2 (Length: 331)
Name: NF10873_low_2
Description: NF10873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10873_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 1 - 317
Target Start/End: Original strand, 5698400 - 5698720
Alignment:
| Q |
1 |
accagtacaattaagtcaaaattataagagtgtgtttgattaagagattttaatgaggtgatgtatttttaagggaactcaaattcttccatgtaaatat |
100 |
Q |
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| T |
5698400 |
accagtacaattaagtcaaaattataagagtgtgtttgattaagagattttaatgaggtgatgtatttttaagggaactcaaattcttccatgtaaatat |
5698499 |
T |
|
| Q |
101 |
tatcatttagatgaaaaatttggagtataaacatgaagggatttgatggagtattttactaaactaaatttcttattttggaattagtcacttgagattt |
200 |
Q |
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| T |
5698500 |
tatcatttagatgaaaaatttggagtataaacatgaagggatttgatggagtattttactaaactaaatttcttattttggaattagtcacttgagattt |
5698599 |
T |
|
| Q |
201 |
ttgaaatttcataaaattagaccaagaatgtttaagaaagaataaatttttactctattcaaacaaaaac----ttagaaataaaaagaattcaattgaa |
296 |
Q |
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| T |
5698600 |
ttgaaaattcataaaattagaccaagaatgtttaagaaagaataaatttttactctattcaaacaaaaaaaaaattagaaataaaaagaattcaattgaa |
5698699 |
T |
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| Q |
297 |
gtattttaattgcttcaaatt |
317 |
Q |
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||||||||||||||||||||| |
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| T |
5698700 |
gtattttaattgcttcaaatt |
5698720 |
T |
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