View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10873_low_4 (Length: 320)
Name: NF10873_low_4
Description: NF10873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10873_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 263; Significance: 1e-146; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 1 - 302
Target Start/End: Complemental strand, 30304984 - 30304668
Alignment:
| Q |
1 |
tcattctttatatagtcaatttaatattagtctctactt---------------atagtactataatggacaactttgaagatgtaacagagccagtaag |
85 |
Q |
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| T |
30304984 |
tcattctttatatagtcaatttaatattagtctctactttctaacacggtgcttatagtactataatggacaactttgaagatgtaacagagccagtaag |
30304885 |
T |
|
| Q |
86 |
tccaagtggacaattcttcaatacaccacccttatgttcatatgttttcggatttttagaattagaaattccaatggacgactctcaaacaatgtatttg |
185 |
Q |
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| T |
30304884 |
tccaagtggacaattcttcaatacaccacccttatgttcatatgttttcggatttttagaattagaaattccaatggacgactctcaaacaatgtatttg |
30304785 |
T |
|
| Q |
186 |
ttccaaaatttcttacctatcaatccacgcttctcctccataatggtactttatacgtgatgtttattttttcttacaagtttcatataataaatactaa |
285 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
30304784 |
ttccaaaatttcttacctatcaatccacgcttctcctccataatggtactttatacgtgttgtttattttttcttacaagtttcatataataaatactaa |
30304685 |
T |
|
| Q |
286 |
catgtacttgtacttat |
302 |
Q |
| |
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||||||||||||||||| |
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| T |
30304684 |
catgtacttgtacttat |
30304668 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 50 - 302
Target Start/End: Original strand, 30280337 - 30280588
Alignment:
| Q |
50 |
aatggacaactttgaagatgtaacagagccagtaagtccaagtggacaattcttcaatacaccacccttatgttcatatgttttcggatttttagaatta |
149 |
Q |
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||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
30280337 |
aatggacaactttgaagatctaactgagccagtaagtccaagtggacaattcttcaatacaccacccttatgttcatatgttt-cggatttttagaatta |
30280435 |
T |
|
| Q |
150 |
gaaattccaatggacgactctcaaacaatgtatttgttccaaaatttcttacctatcaatccacgcttctcctccataatggtactttatacgtgatgtt |
249 |
Q |
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| T |
30280436 |
gaaattccaatggacgactctcaaacaatgtatttgttccaaaatttcttacctatcaatccacgcttctcctccataatggtactttatacgtgttgtt |
30280535 |
T |
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| Q |
250 |
tattttttcttacaagtttcatataataaatactaacatgtacttgtacttat |
302 |
Q |
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| T |
30280536 |
tattttttcttacaagtttcatataataaatactaacatgtacttgtacttat |
30280588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 47 - 294
Target Start/End: Complemental strand, 30271885 - 30271633
Alignment:
| Q |
47 |
tataatggacaactttgaagatgtaacagagccagtaagtccaagtggacaattcttcaatacaccacccttatgttcatatgttttcggatttttagaa |
146 |
Q |
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||||||||||||||||||| ||||||| ||||||||||||||||||||||||| |||||| ||||||||| ||||||||||||||||||||||||| ||| |
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| T |
30271885 |
tataatggacaactttgaatatgtaaccgagccagtaagtccaagtggacaatacttcaacacaccacccctatgttcatatgttttcggatttttggaa |
30271786 |
T |
|
| Q |
147 |
ttagaaattccaatggacgactctcaaacaatgtatttgttccaaaat---ttcttacctatcaatccacgcttctcctccataatggtactttatacgt |
243 |
Q |
| |
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| | |||||||||| || || |||||||| ||||||||||||||| || |||||||||||||||||||| ||||||||||||||||||||||||| || |
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| T |
30271785 |
tcacaaattccaattgatgattctcaaactatgtatttgttccaacatgtcttcttacctatcaatccacgtttctcctccataatggtactttataagt |
30271686 |
T |
|
| Q |
244 |
g--atgtttattttttcttacaagtttcatataataaatactaacatgtactt |
294 |
Q |
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| |||||||||| |||| ||||| |||| ||||||||| ||||||||||| |
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| T |
30271685 |
gttgtgtttattttgccttaaaagttgcatacaataaatacgaacatgtactt |
30271633 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 50 - 234
Target Start/End: Complemental strand, 30264957 - 30264770
Alignment:
| Q |
50 |
aatggacaactttgaagatgtaacagagccagtaagtccaagtggacaattcttcaatacaccacccttatgttcatatgttttcggatttttagaatta |
149 |
Q |
| |
|
||||||||||||||||||| |||| ||||||||||||||||||||||||| ||||| || || ||| |||||||||||||||| |||||||| |||||| |
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| T |
30264957 |
aatggacaactttgaagatctaactgagccagtaagtccaagtggacaatatttcaacacccctcccctatgttcatatgtttttggatttttggaatta |
30264858 |
T |
|
| Q |
150 |
gaaattccaatggacgactctcaaacaatgtatttgttccaaaat---ttcttacctatcaatccacgcttctcctccataatggtac |
234 |
Q |
| |
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||||||||||| || ||||||||| | ||||||||| ||||| || ||||||||||||||||||||||||||||||||||| |||| |
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| T |
30264857 |
gaaattccaattgatgactctcaagctatgtatttgatccaacatttgttcttacctatcaatccacgcttctcctccataatagtac |
30264770 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 50 - 234
Target Start/End: Original strand, 30287231 - 30287418
Alignment:
| Q |
50 |
aatggacaactttgaagatgtaacagagccagtaagtccaagtggacaattcttcaatacaccacccttatgttcatatgttttcggatttttagaatta |
149 |
Q |
| |
|
||||||||||||||||||| |||| ||||||||||||||||||||||||| ||||| || || ||| |||||||||||||||| |||||||| |||||| |
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| T |
30287231 |
aatggacaactttgaagatctaactgagccagtaagtccaagtggacaatatttcaacacccctcccctatgttcatatgtttttggatttttggaatta |
30287330 |
T |
|
| Q |
150 |
gaaattccaatggacgactctcaaacaatgtatttgttccaaaat---ttcttacctatcaatccacgcttctcctccataatggtac |
234 |
Q |
| |
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||||||||||| || ||||||||| | ||||||||| ||||| || ||||||||||||||||||||||||||||||||||| |||| |
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| T |
30287331 |
gaaattccaattgatgactctcaagctatgtatttgatccaacatttgttcttacctatcaatccacgcttctcctccataatagtac |
30287418 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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