View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10873_low_7 (Length: 250)
Name: NF10873_low_7
Description: NF10873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10873_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 25730145 - 25729903
Alignment:
| Q |
1 |
aagcttttgattaaaaacactaatgaattgaaatccttgttagtatttgtgagcaatatttagaatgtgagaggtgagcttttttggtttagagaacatg |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| ||||||||| |
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| T |
25730145 |
aagcttttgattaaaaacactaatgaattgaaatccttgttagtatttgtgagcaatctttagaatgtgagaggtgagtttttttggtttggagaacatg |
25730046 |
T |
|
| Q |
101 |
accatgtgatctgaaccatttatcactttcacctcaacatatggaccagtattcccaatcatccacatttgataatcctctggaaacaaaatgtcttctt |
200 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
25730045 |
accatatgatctgaaccatttatcactttcacctcaacatatggaccagtattcccaatcacccacatttgataatcctctggaaacaaaatgtcttctt |
25729946 |
T |
|
| Q |
201 |
tgctgatgatgaagactttaggtacccttccatgcctatgctt |
243 |
Q |
| |
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| T |
25729945 |
tgctgatgatgtagactttaggcacccttccatacctatgctt |
25729903 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 147; Significance: 1e-77; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 7 - 240
Target Start/End: Original strand, 1800340 - 1800574
Alignment:
| Q |
7 |
ttgattaaaaacactaatgaattgaaa-tccttgttagtatttgtgagcaatatttagaatgtgagaggtgagcttttttggtttagagaacatgaccat |
105 |
Q |
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|||||||||||||| |||||||||||| ||||||| |||||||| |||||| ||||||||||||||||||||||||| ||||||||| ||||||||||| |
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| T |
1800340 |
ttgattaaaaacaccaatgaattgaaaatccttgtcagtatttgcgagcaacttttagaatgtgagaggtgagcttttctggtttagaaaacatgaccat |
1800439 |
T |
|
| Q |
106 |
gtgatctgaaccatttatcactttcacctcaacatatggaccagtattcccaatcatccacatttgataatcctctggaaacaaaatgtcttctttgctg |
205 |
Q |
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| T |
1800440 |
gtgatctgaatcctttatcactttcacctcaacatatggacgagtattctcaatcatccatatttgaaaatcctctgtcaacaaattatcttctttgctg |
1800539 |
T |
|
| Q |
206 |
atgatgaagactttaggtacccttccatgcctatg |
240 |
Q |
| |
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||||||||| ||||||| |||||||||| |||||| |
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| T |
1800540 |
atgatgaaggctttaggcacccttccattcctatg |
1800574 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 40 - 243
Target Start/End: Original strand, 1782594 - 1782797
Alignment:
| Q |
40 |
ttagtatttgtgagcaatatttagaatgtgagaggtgagcttttttggtttagagaacatgaccatgtgatctgaaccatttatcactttcacctcaaca |
139 |
Q |
| |
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|||||||||||||||||| |||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| | |||||||||||||| |||||| |
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| T |
1782594 |
ttagtatttgtgagcaatctttagaatgtgagaggtgagttttttaggtttagagaacatgaccatgtgatctgaatcctttatcactttcacttcaaca |
1782693 |
T |
|
| Q |
140 |
tatggaccagtattcccaatcatccacatttgataatcctctggaaacaaaatgtcttctttgctgatgatgaagactttaggtacccttccatgcctat |
239 |
Q |
| |
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||||||||||| || |||| ||||| | ||| ||||||| | | | ||||| |||||||||| ||||||||||| ||||||||||||| ||| | |
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| T |
1782694 |
tatggaccagttctctcaattatccataattgcatatcctctttgatgatattgtctcctttgctgataatgaagacttttggtacccttccattcctct |
1782793 |
T |
|
| Q |
240 |
gctt |
243 |
Q |
| |
|
|||| |
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|
| T |
1782794 |
gctt |
1782797 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 44 - 233
Target Start/End: Original strand, 1776172 - 1776361
Alignment:
| Q |
44 |
tatttgtgagcaatatttagaatgtgagaggtgagcttttttggtttagagaacatgaccatgtgatctgaaccatttatcactttcacctcaacatatg |
143 |
Q |
| |
|
|||||||||||| | ||||||| ||||||||||||||||| ||||| |||||||| ||||||||||||||| | |||||||||||||| |||||||||| |
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| T |
1776172 |
tatttgtgagcactccttagaatatgagaggtgagctttttaggtttggagaacataaccatgtgatctgaatcctttatcactttcacttcaacatatg |
1776271 |
T |
|
| Q |
144 |
gaccagtattcccaatcatccacatttgataatcctctggaaacaaaatgtcttctttgctgatgatgaagactttaggtacccttccat |
233 |
Q |
| |
|
||||||| || |||| ||||| | ||| ||||||| || ||||||||| |||| ||| ||||||||||| ||||||||||||| |
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| T |
1776272 |
gaccagttctctcaattatccataattgcagatcctctctaatgaaaatgtctcctttagagataatgaagacttttggtacccttccat |
1776361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 77 - 182
Target Start/End: Original strand, 1771591 - 1771696
Alignment:
| Q |
77 |
agcttttttggtttagagaacatgaccatgtgatctgaaccatttatcactttcacctcaacatatggaccagtattcccaatcatccacatttgataat |
176 |
Q |
| |
|
||||| ||||||||||| ||||||||||||||||| ||| | | |||||||| ||||| || |||||||| | || |||||||||||||||| ||| |
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| T |
1771591 |
agcttctttggtttagacaacatgaccatgtgatcagaatcctctatcacttccaccttctcaaatggaccacttctcttaatcatccacatttgaaaat |
1771690 |
T |
|
| Q |
177 |
cctctg |
182 |
Q |
| |
|
|||||| |
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|
| T |
1771691 |
cctctg |
1771696 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 59; Significance: 4e-25; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 44 - 150
Target Start/End: Complemental strand, 19790113 - 19790008
Alignment:
| Q |
44 |
tatttgtgagcaatatttagaatgtgagaggtgagcttttttggtttagagaacatgaccatgtgatctgaaccatttatcactttcacctcaacatatg |
143 |
Q |
| |
|
|||||||||| ||| ||||| ||||||||| | || ||||||||||| |||||||||||||| ||||||||| | |||||||| |||||||||||||||| |
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| T |
19790113 |
tatttgtgagaaatctttagtatgtgagagttaag-ttttttggtttggagaacatgaccatttgatctgaatcctttatcacattcacctcaacatatg |
19790015 |
T |
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| Q |
144 |
gaccagt |
150 |
Q |
| |
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||||||| |
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| T |
19790014 |
gaccagt |
19790008 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 92 - 134
Target Start/End: Original strand, 41324592 - 41324634
Alignment:
| Q |
92 |
gagaacatgaccatgtgatctgaaccatttatcactttcacct |
134 |
Q |
| |
|
|||||||||||||||||||||||| | |||||||| ||||||| |
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|
| T |
41324592 |
gagaacatgaccatgtgatctgaatcctttatcacattcacct |
41324634 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 92 - 134
Target Start/End: Complemental strand, 47249730 - 47249688
Alignment:
| Q |
92 |
gagaacatgaccatgtgatctgaaccatttatcactttcacct |
134 |
Q |
| |
|
|||||||||||||||||||||||| | |||||||| ||||||| |
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|
| T |
47249730 |
gagaacatgaccatgtgatctgaatcctttatcacattcacct |
47249688 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 55; Significance: 1e-22; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 44 - 150
Target Start/End: Original strand, 1672778 - 1672884
Alignment:
| Q |
44 |
tatttgtgagcaatatttagaatgtgagaggtgagcttttttggtttagagaacatgaccatgtgatctgaaccatttatcactttcacctcaacatatg |
143 |
Q |
| |
|
|||||||||||||| ||||| |||||||||||||||||||||||||| |||||||||||||| ||||| ||| | ||||||| |||| ||||| | ||| |
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| T |
1672778 |
tatttgtgagcaatctttagtatgtgagaggtgagcttttttggtttggagaacatgaccatttgatccgaatccattatcacattcagctcaatacatg |
1672877 |
T |
|
| Q |
144 |
gaccagt |
150 |
Q |
| |
|
|| |||| |
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|
| T |
1672878 |
gatcagt |
1672884 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 44 - 135
Target Start/End: Complemental strand, 4081520 - 4081431
Alignment:
| Q |
44 |
tatttgtgagcaatatttagaatgtgagaggtgagcttttttggtttagagaacatgaccatgtgatctgaaccatttatcactttcacctc |
135 |
Q |
| |
|
||||||||| |||| ||||| ||||||| |||||||||||| |||||||||||||| |||||||||||||| | ||||||| |||||||| |
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|
| T |
4081520 |
tatttgtgaccaatctttagtatgtgag--gtgagcttttttagtttagagaacatggccatgtgatctgaatccattatcacattcacctc |
4081431 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 75 - 148
Target Start/End: Complemental strand, 21124822 - 21124749
Alignment:
| Q |
75 |
tgagcttttttggtttagagaacatgaccatgtgatctgaaccatttatcactttcacctcaacatatggacca |
148 |
Q |
| |
|
|||||||||||||||| |||||||||||||| | ||||||| | |||||||| |||||||||| | |||||||| |
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|
| T |
21124822 |
tgagcttttttggtttggagaacatgaccattttatctgaatcctttatcacattcacctcaatacatggacca |
21124749 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 71 - 134
Target Start/End: Original strand, 4845155 - 4845218
Alignment:
| Q |
71 |
gaggtgagcttttttggtttagagaacatgaccatgtgatctgaaccatttatcactttcacct |
134 |
Q |
| |
|
|||||||||||||||| ||||| ||||||||| |||||||||||| | ||||||| ||||||| |
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|
| T |
4845155 |
gaggtgagcttttttgctttagtgaacatgactatgtgatctgaatccattatcacattcacct |
4845218 |
T |
|
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