View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10874_high_1 (Length: 227)
Name: NF10874_high_1
Description: NF10874
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10874_high_1 |
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Alignment Details
Target: chr6 (Bit Score: 170; Significance: 2e-91; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 42 - 211
Target Start/End: Original strand, 15959815 - 15959984
Alignment:
| Q |
42 |
aaaacctttgctttaatggaaaccctcttagactgactttgtttctgtctagattgaccttttgaagttgtcccaacaaccatgaagttggagcacaatg |
141 |
Q |
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| T |
15959815 |
aaaacctttgctttaatggaaaccctcttagactgactttgtttctgtctagattgaccttttgaagttgtcccaacaaccatgaagttggagcacaatg |
15959914 |
T |
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| Q |
142 |
tgaaactgacatttcataataccataaatgccaaaataattgaacacagtgttctcgaacttgatacttc |
211 |
Q |
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| T |
15959915 |
tgaaactgacatttcataataccataaatgccaaaataattgaacacagtgttctcgaacttgatacttc |
15959984 |
T |
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Target: chr6; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 118 - 207
Target Start/End: Original strand, 15963118 - 15963207
Alignment:
| Q |
118 |
caaccatgaagttggagcacaatgtgaaactgacatttcataataccataaatgccaaaataattgaacacagtgttctcgaacttgata |
207 |
Q |
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| T |
15963118 |
caaccatgaagttggagcacaatgtgaaactgacatttcatactaccataaatgccaaaataaatgcacacattgttctccaacttgata |
15963207 |
T |
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