View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10874_high_2 (Length: 212)
Name: NF10874_high_2
Description: NF10874
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10874_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 186; Significance: 1e-101; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 3 - 188
Target Start/End: Complemental strand, 36552308 - 36552123
Alignment:
| Q |
3 |
agataaaacaatatacggtgacaatcagtatgtcttcattttctccagctactatattttaacatatacaaagtatgaccacatacacaaactatttaaa |
102 |
Q |
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| T |
36552308 |
agataaaacaatatacggtgacaatcagtatgtcttcattttctccagctactatattttaacatatacaaagtatgaccacatacacaaactatttaaa |
36552209 |
T |
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| Q |
103 |
atgcctaaaacagagcattggacaaccaaactaaacagagcatttaaaacaaggtgaaagatttgaaaatctattttaaagggaga |
188 |
Q |
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| T |
36552208 |
atgcctaaaacagagcattggacaaccaaactaaacagagcatttaaaacaaggtgaaagatttgaaaatctattttaaagggaga |
36552123 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 3 - 188
Target Start/End: Original strand, 36559837 - 36560022
Alignment:
| Q |
3 |
agataaaacaatatacggtgacaatcagtatgtcttcattttctccagctactatattttaacatatacaaagtatgaccacatacacaaactatttaaa |
102 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36559837 |
agataaaacaatatacggtgacaatcagtatgtcttcattttctccagctactatattttaacatatacaaagtatgaccacatacacaaactatttaaa |
36559936 |
T |
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| Q |
103 |
atgcctaaaacagagcattggacaaccaaactaaacagagcatttaaaacaaggtgaaagatttgaaaatctattttaaagggaga |
188 |
Q |
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| T |
36559937 |
atgcctaaaacagagcattggacaaccaaactaaacagagcatttaaaacaaggtgaaagatttgaaaatctattttaaagggaga |
36560022 |
T |
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