View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10874_low_1 (Length: 339)
Name: NF10874_low_1
Description: NF10874
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10874_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 108; Significance: 3e-54; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 47 - 166
Target Start/End: Original strand, 41829173 - 41829292
Alignment:
| Q |
47 |
gacactcgaaaattgaaagaatagccacgacaacagctaattgtgattaaagaagccccctgcaaacatgtaaacggaagtacactcagcaaaaggggat |
146 |
Q |
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| T |
41829173 |
gacactcgaaaattgaaagaatagccacgacaacagctaattgtgattaaagaagccccctgcaaacaagtaaacggaagtacgcgcagcaaaaggggat |
41829272 |
T |
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| Q |
147 |
ttcatacaaacacacaagcc |
166 |
Q |
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| T |
41829273 |
ttcatacaaacacacaagcc |
41829292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 15 - 166
Target Start/End: Original strand, 12369347 - 12369500
Alignment:
| Q |
15 |
gaacagccacgtcaaacacatg----taaatggatggacactcgaaaattgaaagaatagccacgacaacagctaattgtgattaaagaagccccctgca |
110 |
Q |
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| T |
12369347 |
gaacagccacgtcaaacacctgcaaataaatggatggacactcgaaaattgaaagaaaagccacgacaacagctaattgtgattaatgaag-cccctgca |
12369445 |
T |
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| Q |
111 |
aacatgtaaacggaagtacactcagcaaaaggggatttcatacaaacacacaagcc |
166 |
Q |
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| T |
12369446 |
aacaagtaaacagaaggacacgcagcaaaa-gggattaaatacaaacacacaagcc |
12369500 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 169 - 323
Target Start/End: Original strand, 12369527 - 12369679
Alignment:
| Q |
169 |
gatgcaatgatataaatgaacaggcaattggaattgaaactagagcaacatccacaatgtaataattggaatccagatataatacgtagcaacaagataa |
268 |
Q |
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| T |
12369527 |
gatgcaatgatataaatgaaaaggcaattggaattgaaactagaggcacaaccac----taataattgaaatccagatataacacgtagcagcaagagaa |
12369622 |
T |
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| Q |
269 |
ttaattgaatttggatgaataat--ataaaaaacaaaacgccaattgaaatcaaaat |
323 |
Q |
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| T |
12369623 |
ttaattgagtttggatgaataataaaaaaaaaacaaaatggcaattgaaatcaaaat |
12369679 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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