View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10874_low_3 (Length: 245)

Name: NF10874_low_3
Description: NF10874
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10874_low_3
NF10874_low_3
[»] chr1 (1 HSPs)
chr1 (19-245)||(44635388-44635629)
[»] chr6 (2 HSPs)
chr6 (20-152)||(12281790-12281922)
chr6 (163-241)||(12281680-12281758)
[»] chr4 (3 HSPs)
chr4 (163-245)||(37742356-37742438)
chr4 (163-245)||(37749426-37749508)
chr4 (163-241)||(37752280-37752358)
[»] scaffold0119 (2 HSPs)
scaffold0119 (164-245)||(13456-13537)
scaffold0119 (164-245)||(19136-19217)
[»] chr2 (1 HSPs)
chr2 (164-245)||(1293057-1293138)


Alignment Details
Target: chr1 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 19 - 245
Target Start/End: Original strand, 44635388 - 44635629
Alignment:
Q  19 aaacaacacctacccttaccttataatctttaatgaaagatgctgcaagtagtggcaccattgcaccaattgaaaatgctaaagctgaagctgctgctgc 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44635388 aaacaacacctacccttaccttataatctttaatgaaagatgctgcaagtagtggcaccattgcaccaattgaaaatgctaaagctgaagctgctgctgc 44635487  T
Q  119 ttgtaaaggatttggcaaactttctttctcttcaatattattac---------------ctctttttaattgagcaatttcaatgtcaagttgtgaataa 203  Q
    ||||||||||||||||||||||||||||||||||||||||||||               |||||||||||||||||||||||||||||||||||||||||    
T  44635488 ttgtaaaggatttggcaaactttctttctcttcaatattattacctctttcaatattgtctctttttaattgagcaatttcaatgtcaagttgtgaataa 44635587  T
Q  204 acagatacaaactcacctattgccatgctacatgcaccagct 245  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  44635588 acagatacaaactcacctattgccatgctacatgcaccagct 44635629  T

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Target: chr6 (Bit Score: 61; Significance: 3e-26; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 20 - 152
Target Start/End: Complemental strand, 12281922 - 12281790
Alignment:
Q  20 aacaacacctacccttaccttataatctttaatgaaagatgctgcaagtagtggcaccattgcaccaattgaaaatgctaaagctgaagctgctgctgct 119  Q
    ||||||||| || || |||||||||||  | || ||| | |||||||||| |||||||||||||||||| ||||| ||||||||||| || ||||| |||    
T  12281922 aacaacaccaactctcaccttataatcccttataaaaaaagctgcaagtaatggcaccattgcaccaatagaaaaagctaaagctgatgcagctgcagct 12281823  T
Q  120 tgtaaaggatttggcaaactttctttctcttca 152  Q
    |||| |||||| || ||||||||||||||||||    
T  12281822 tgtagaggattaggtaaactttctttctcttca 12281790  T

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Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 163 - 241
Target Start/End: Complemental strand, 12281758 - 12281680
Alignment:
Q  163 ctctttttaattgagcaatttcaatgtcaagttgtgaataaacagatacaaactcacctattgccatgctacatgcacc 241  Q
    ||||||| | |||||||| ||||||||| | |||||| || ||||| ||||| ||||||||||||||||| ||||||||    
T  12281758 ctcttttcatttgagcaacttcaatgtctaattgtgagtacacagagacaaattcacctattgccatgctgcatgcacc 12281680  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 163 - 245
Target Start/End: Complemental strand, 37742438 - 37742356
Alignment:
Q  163 ctctttttaattgagcaatttcaatgtcaagttgtgaataaacagatacaaactcacctattgccatgctacatgcaccagct 245  Q
    |||||||||  ||||| || |||||||||  ||| | ||||||||| ||||||||||| |||||||||||||| |||||||||    
T  37742438 ctctttttatctgagctatctcaatgtcatattgagtataaacagaaacaaactcaccaattgccatgctacaagcaccagct 37742356  T

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Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 163 - 245
Target Start/End: Complemental strand, 37749508 - 37749426
Alignment:
Q  163 ctctttttaattgagcaatttcaatgtcaagttgtgaataaacagatacaaactcacctattgccatgctacatgcaccagct 245  Q
    |||||||||  ||||| || |||||||||  ||| | ||||||||| ||||||||||| |||||||||||||| |||||||||    
T  37749508 ctctttttatctgagctatctcaatgtcatattgagtataaacagaaacaaactcaccaattgccatgctacaagcaccagct 37749426  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 163 - 241
Target Start/End: Original strand, 37752280 - 37752358
Alignment:
Q  163 ctctttttaattgagcaatttcaatgtcaagttgtgaataaacagatacaaactcacctattgccatgctacatgcacc 241  Q
    |||||||||  ||||| || |||||||||  ||| | ||||||||| ||||||||||| |||||||||||||| |||||    
T  37752280 ctctttttatctgagctatctcaatgtcatattgagtataaacagaaacaaactcaccaattgccatgctacaagcacc 37752358  T

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Target: scaffold0119 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 164 - 245
Target Start/End: Original strand, 13456 - 13537
Alignment:
Q  164 tctttttaattgagcaatttcaatgtcaagttgtgaataaacagatacaaactcacctattgccatgctacatgcaccagct 245  Q
    |||||| | ||| |||| |||||| |||  ||||||||| ||||| ||||| ||||| ||||||||||||||||||||||||    
T  13456 tcttttcatttgtgcaaattcaatatcatattgtgaatagacagacacaaattcaccaattgccatgctacatgcaccagct 13537  T

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Target: scaffold0119; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 164 - 245
Target Start/End: Original strand, 19136 - 19217
Alignment:
Q  164 tctttttaattgagcaatttcaatgtcaagttgtgaataaacagatacaaactcacctattgccatgctacatgcaccagct 245  Q
    |||||| | ||| |||| |||||| |||  ||||||||| ||||| ||||| ||||| ||||||||||||||||||||||||    
T  19136 tcttttcatttgtgcaaattcaatatcatattgtgaatagacagacacaaattcaccaattgccatgctacatgcaccagct 19217  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 164 - 245
Target Start/End: Complemental strand, 1293138 - 1293057
Alignment:
Q  164 tctttttaattgagcaatttcaatgtcaagttgtgaataaacagatacaaactcacctattgccatgctacatgcaccagct 245  Q
    |||||| | ||| |||| |||||| |||  ||||||||| ||||| ||||| ||||| ||||||||||||||||||||||||    
T  1293138 tcttttcatttgtgcaaattcaatatcatattgtgaatagacagacacaaattcaccaattgccatgctacatgcaccagct 1293057  T

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