View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10874_low_4 (Length: 230)
Name: NF10874_low_4
Description: NF10874
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10874_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 179; Significance: 9e-97; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 1 - 207
Target Start/End: Complemental strand, 18925375 - 18925169
Alignment:
| Q |
1 |
acacgatctcaattccgttgatgaaagcataagcctttgattgatttatggtgtttggaatgaaagttatatttaacttctcacttggtttcattttgag |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
18925375 |
acacgatctcaattccgttgatgaaagcataagcctttggttgatttatggtgtttggaatgaaagttatatttaacttctcagttggtttcattttgag |
18925276 |
T |
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| Q |
101 |
gcagtactctttcgtgattgtcttgttatcgttttgaaaccaaagtgcggggttaaagtctttgagaagggtgacattgtttccaactacgacggtgaag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||| |||||||| |||||||||| |
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| T |
18925275 |
gcagtactctttcgtgattgtcttgttatcgttttgaagccaaagtgcggggttaaagtcattgagaagggtgacattggttccaactttgacggtgaag |
18925176 |
T |
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| Q |
201 |
agggcgt |
207 |
Q |
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||||||| |
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| T |
18925175 |
agggcgt |
18925169 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 52; Significance: 6e-21; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 172
Target Start/End: Original strand, 4667403 - 4667574
Alignment:
| Q |
1 |
acacgatctcaattccgttgatgaaagcataagcctttgattgatttatggtgtttggaatgaaagttatatttaacttctcacttggtttcattttgag |
100 |
Q |
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|||| |||||||||||||||||||||||| |||| ||| |||| ||| || | || ||||||||||||| | || ||||| | | |||| | | || |
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| T |
4667403 |
acacaatctcaattccgttgatgaaagcaaaagcatttaattggtttgtgtttttgggaatgaaagttacgtctagtttctccccttgtttggtatggat |
4667502 |
T |
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| Q |
101 |
gcagtactctttcgtgattgtcttgttatcgttttgaaaccaaagtgcggggttaaagtctttgagaagggt |
172 |
Q |
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| T |
4667503 |
gcaatattctttggtgattgtcttgttatcgtttggaagccaaagtgaagggctaaagtctttgagaagggt |
4667574 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 57 - 208
Target Start/End: Original strand, 4631451 - 4631602
Alignment:
| Q |
57 |
ggaatgaaagttatatttaacttctcacttggtttcattttgaggcagtactctttcgtgattgtcttgttatcgttttgaaaccaaagtgcggggttaa |
156 |
Q |
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|||||||||||||| |||| ||||||| |||| |||| | ||| || ||||| |||||||||||| |||||||| || |||||| | ||| |||| |
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| T |
4631451 |
ggaatgaaagttatgtttagcttctcatttggagcaatttgtatgcaatattctttggtgattgtcttgctatcgtttgaaagccaaagcgagggattaa |
4631550 |
T |
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| Q |
157 |
agtctttgagaagggtgacattgtttccaactacgacggtgaagagggcgtt |
208 |
Q |
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| T |
4631551 |
agtctttgagaagggtaaggttggttcctactttgactgtgaagagggcgtt |
4631602 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 12 - 96
Target Start/End: Complemental strand, 4711694 - 4711607
Alignment:
| Q |
12 |
attccgttgatgaaagcataa---gcctttgattgatttatggtgtttggaatgaaagttatatttaacttctcacttggtttcattt |
96 |
Q |
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|||||||| |||||||||||| | ||||| ||||||||| ||||||||||||||||||| ||| ||||||| ||||||| |||| |
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| T |
4711694 |
attccgttaatgaaagcataataaggatttgaatgatttatgttgtttggaatgaaagttatgcttagcttctcatttggtttgattt |
4711607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 36 - 96
Target Start/End: Original strand, 4637357 - 4637417
Alignment:
| Q |
36 |
tttgattgatttatggtgtttggaatgaaagttatatttaacttctcacttggtttcattt |
96 |
Q |
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|||||||| |||||| |||| |||||||||||||| |||||||| ||| ||||||| |||| |
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| T |
4637357 |
tttgattggtttatgctgttaggaatgaaagttatgtttaacttttcatttggtttgattt |
4637417 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 91
Target Start/End: Complemental strand, 4696812 - 4696730
Alignment:
| Q |
12 |
attccgttgatgaaagcataa---gcctttgattgatttatggtgtttggaatgaaagttatatttaacttctcacttggttt |
91 |
Q |
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|||||||| |||||||||||| | ||||| || |||||| || | |||||||||||||| |||||||||||| ||||||| |
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| T |
4696812 |
attccgttaatgaaagcataataaggatttgactggtttatgttgctgggaatgaaagttatgtttaacttctcatttggttt |
4696730 |
T |
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