View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10875_high_5 (Length: 239)
Name: NF10875_high_5
Description: NF10875
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10875_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 223; Significance: 1e-123; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 37332970 - 37333192
Alignment:
| Q |
1 |
tcaaggaatcatgatgttggttggagggttctttaaattgccacatgaaatccctaagccattttggaggtatccactacactatgttgcatttcattca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37332970 |
tcaaggaatcatgatgttggttggagggttctttaaattgccacatgaaatccctaagccattttggaggtatccactacactatgttgcatttcattca |
37333069 |
T |
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| Q |
101 |
tatgtatttgaaggattgttcaagaatgagtatgaaggactaagatttgatattaaaaatggacaaggcacaaatagttacatcactggtgaagaggttt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37333070 |
tatgtatttgaaggattgttcaagaatgagtatgaaggactaagatttgatattaaaaatggacaaggcacaaatagttacatcactggtgaagaggttt |
37333169 |
T |
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| Q |
201 |
tgagggatacttggcaaagtaac |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
37333170 |
tgagggatacttggcaaagtaac |
37333192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 37323761 - 37323983
Alignment:
| Q |
1 |
tcaaggaatcatgatgttggttggagggttctttaaattgccacatgaaatccctaagccattttggaggtatccactacactatgttgcatttcattca |
100 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| || |
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| T |
37323761 |
tcaaggaatcatgattttggttggagggttctttaaattgccacatgaaattcctaagccattttggagatatccactacactatgttgcatttcataca |
37323860 |
T |
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| Q |
101 |
tatgtatttgaaggattgttcaagaatgagtatgaaggactaagatttgatattaaaaatggacaaggcacaaatagttacatcactggtgaagaggttt |
200 |
Q |
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| T |
37323861 |
tatggatttgaaggattgttcaagaatgagtatgaagggttaatattttctactaaaaacggacaaggcacaaatggttacattagtggtgaagaggttt |
37323960 |
T |
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| Q |
201 |
tgagggatacttggcaaagtaac |
223 |
Q |
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|||| |||| ||||||||||||| |
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| T |
37323961 |
tgagagatatttggcaaagtaac |
37323983 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 2 - 220
Target Start/End: Complemental strand, 19542635 - 19542417
Alignment:
| Q |
2 |
caaggaatcatgatgttggttggagggttctttaaattgccacatgaaatccctaagccattttggaggtatccactacactatgttgcatttcattcat |
101 |
Q |
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|||| ||||||||| || |||||||||||||||||||||||||||| | ||||||||| ||||| | |||||| |||| |||||||| |||||| ||| |
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| T |
19542635 |
caagcaatcatgattttaattggagggttctttaaattgccacatgatcttcctaagccaatttggcgatatccattacattatgttgcttttcatacat |
19542536 |
T |
|
| Q |
102 |
atgtatttgaaggattgttcaagaatgagtatgaaggactaagatttgatattaaaaatggacaaggcacaaatagttacatcactggtgaagaggtttt |
201 |
Q |
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|| |||||||||||||| ||||||||||||||||||||||||||| || | ||||| ||||||||||| | || |||||| |||||||||||| |||| |
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| T |
19542535 |
attcctttgaaggattgtttaagaatgagtatgaaggactaagatttaatgtaaaaaagggacaaggcactagtaattacattactggtgaagagatttt |
19542436 |
T |
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| Q |
202 |
gagggatacttggcaaagt |
220 |
Q |
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||| |||| |||||||||| |
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| T |
19542435 |
gagagatatttggcaaagt |
19542417 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 37345267 - 37345199
Alignment:
| Q |
1 |
tcaaggaatcatgatgttggttggagggttctttaaattgccacatgaaatccctaagccattttggag |
69 |
Q |
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|||||||||||||||||||| ||| || ||||||| ||||||| |||| | ||||| ||||||||||| |
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| T |
37345267 |
tcaaggaatcatgatgttggctggtggattctttagattgccaaatgatcttcctaatccattttggag |
37345199 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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