View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10875_low_2 (Length: 269)
Name: NF10875_low_2
Description: NF10875
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10875_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 219; Significance: 1e-120; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 13 - 258
Target Start/End: Complemental strand, 29711533 - 29711290
Alignment:
| Q |
13 |
ttggaaaaacaggtataataacaatttcacacaaccttttgaaaccggatataactgataacgaccgaggttaccatttcatgcaacaacgatagatgac |
112 |
Q |
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| T |
29711533 |
ttggaaaaacgggtataataacaatttcacacaatcttttgaaaccggatataactgataatgaccgaggttaccatttcatgcaacaacgatagatgac |
29711434 |
T |
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| Q |
113 |
actgcaaatctcacaaacatctgagaaatatgtgaaatactacattatatgtatgtttatttgttccagtactgttataaatgtgttgttagtattgtga |
212 |
Q |
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| T |
29711433 |
actgcaaatctcacaaacatctgagaaatatgtgaaatactacattatatgtatgtttatttgttccagtactgttataaatgtgttgttattattgtga |
29711334 |
T |
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| Q |
213 |
aaagatagttgtggtgtaaatctgagtgatgagagatacacaggtt |
258 |
Q |
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| T |
29711333 |
aaagatagttgtggtgtaaatctgagtgat--gagatacacaggtt |
29711290 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 18 - 126
Target Start/End: Original strand, 29697310 - 29697418
Alignment:
| Q |
18 |
aaaacaggtataataacaatttcacacaaccttttgaaaccggatataactgataacgaccgaggttaccatttcatgcaacaacgatagatgacactgc |
117 |
Q |
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| T |
29697310 |
aaaacgggtacaataacaatttcacacaaccttttgaaaccggatataaacggtgattatcgaggttaccatttcatgagacaacaatagacgacactgt |
29697409 |
T |
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| Q |
118 |
aaatctcac |
126 |
Q |
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| T |
29697410 |
aaatctcac |
29697418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 41 - 190
Target Start/End: Original strand, 29689171 - 29689320
Alignment:
| Q |
41 |
acacaaccttttgaaaccggatataactgataacgaccgaggttaccatttcatgcaacaacgatagatgacactgcaaatctcacaaacatctgagaaa |
140 |
Q |
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| T |
29689171 |
acacaaccttttgaaaccggatataaccggtgattatcgaggttaccatttcatgagacaacaatagacgacactgcaaatctcactatcatatgtgaaa |
29689270 |
T |
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| Q |
141 |
tatgtgaaatactacatta-tatgtatgtttatttgttccagtactgttat |
190 |
Q |
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| T |
29689271 |
cctgtgaaatact-cagtattatgtttgtttatttgtttgattactgttat |
29689320 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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