View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10875_low_4 (Length: 248)
Name: NF10875_low_4
Description: NF10875
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10875_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 3859456 - 3859689
Alignment:
| Q |
1 |
aaaatatattagatttttctaatatttttagaattttcaattcacaataaaatctcatactctccaccatgagctgctagtcatcttatgtgagcaatat |
100 |
Q |
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| T |
3859456 |
aaaatatattagatttttctaatatttttagaattttcaattcacaataaaatctcatactctccaccatgagctgctagtcat-ttatgtgagcaatat |
3859554 |
T |
|
| Q |
101 |
atgttaataagtttagtccctaagtgcacttcatatgataaatggtcgtaaagatatttgatatgttacatcgtagatttgaacctacataaactatcgc |
200 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||| || ||||||||||| |||||||||| |||| |
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| T |
3859555 |
atgttaataagtttagtccctaagtgcacctcatatgataaatggttgtaaagatatttgatatgttaaattgtagatttgaatctacataaaccatcgt |
3859654 |
T |
|
| Q |
201 |
ttgtctaaactcttaaaataatcatttgtctcccc |
235 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |
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| T |
3859655 |
gtgtctaaactcttaaaataatcatttgtctcccc |
3859689 |
T |
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