View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10876_high_1 (Length: 277)
Name: NF10876_high_1
Description: NF10876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10876_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 246; Significance: 1e-136; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 17 - 266
Target Start/End: Complemental strand, 41818267 - 41818018
Alignment:
| Q |
17 |
aatcagaaagactagccaaacaacatttcatataatttgctttctctgaattttgtgatgtaacttcattgtaggggaaagcacaaacttttattgctgg |
116 |
Q |
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| T |
41818267 |
aatcagaaagactagccaaacaacatttcatataatttgctttgtctgaattttgtgatgtaacttcattgtaggggaaagcacaaacttttattgctgg |
41818168 |
T |
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| Q |
117 |
ggcaaattcaatatctggtttactatcaccaattgttatgagtcctctgacttgtgagtagaataccaatgctaacttctcattagaccattttacatta |
216 |
Q |
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| T |
41818167 |
ggcaaattcaatatctggtttactatcaccaattgttatgagtcctctgacttgtgagtagaataccaatgctaacttctcattagaccattttacatta |
41818068 |
T |
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| Q |
217 |
attttgacaccttatgctacaatataataactgctgtttcatactttcat |
266 |
Q |
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| T |
41818067 |
attttgacaccttatgctacaatataataactgctgtttcatactttcat |
41818018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 44 - 258
Target Start/End: Complemental strand, 41824553 - 41824340
Alignment:
| Q |
44 |
tcatataatttgctttctctgaattttgtgatgtaacttcattgtaggggaaagcacaaacttttattgctggggcaaattcaatatctggtttactatc |
143 |
Q |
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| T |
41824553 |
tcatatgatttgctttctctgaattttatggtgtaacttaactgcagggaaaagcacaaacttttattgctggggcacaatctatatctgatttactatc |
41824454 |
T |
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| Q |
144 |
accaattgttatgagtcctctgacttgtgagtagaataccaatgctaacttctcattagaccattttacattaattttgacaccttatgctacaatataa |
243 |
Q |
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| T |
41824453 |
accaattgtaatgagccctttgacttgtgagtagaatactaaagctaacttctcattagaccattttacataaattttgaaagcttatagtacaatataa |
41824354 |
T |
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| Q |
244 |
taactgctgtttcat |
258 |
Q |
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| T |
41824353 |
taactg-tgtttcat |
41824340 |
T |
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