View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10876_low_1 (Length: 445)
Name: NF10876_low_1
Description: NF10876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10876_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 188 - 411
Target Start/End: Complemental strand, 26769378 - 26769155
Alignment:
| Q |
188 |
aatggaagtccgatagaggagtccaaggtgtggaagggactaagacatggtgatcctttgtctctgttgcactttgcgatagcagctaaaggcggtggat |
287 |
Q |
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| T |
26769378 |
aatggaagtgcgatagaggagtccaaggtgtggaagggactaagacatggtgatcctttgtctctgttccactttgcgatagcagctaaaggcggtggat |
26769279 |
T |
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| Q |
288 |
attggagcttttaaaagttataaggtaaataatgaattaagttttgatatactttggtctagtggtgttgatttgggtcctcggagtgtgtttccccata |
387 |
Q |
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| T |
26769278 |
attggagcttttaaaagttataaggtaaataatgaattaagtttcgatatactttggtctagtggtgttgacctgggtcctcagagtgtattttcccata |
26769179 |
T |
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| Q |
388 |
aagtttttagttcgattgtctctg |
411 |
Q |
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| T |
26769178 |
aagtttttagttcggttgtctctg |
26769155 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 49 - 149
Target Start/End: Complemental strand, 26769644 - 26769544
Alignment:
| Q |
49 |
gtgacatattttatccaaaactagagatcgaagacgttttgatttaatagatgctgaaaggaacataatgatctttttaccttttgttgagtagtgctag |
148 |
Q |
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| T |
26769644 |
gtgacatattttatccaaaactagagatcgaagacgttttgatttaatagatactgaaaggaacataatgatctttttaccttttgttgagtagtgctag |
26769545 |
T |
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| Q |
149 |
a |
149 |
Q |
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| T |
26769544 |
a |
26769544 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 83; Significance: 4e-39; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 286 - 408
Target Start/End: Complemental strand, 30317793 - 30317671
Alignment:
| Q |
286 |
atattggagcttttaaaagttataaggtaaataatgaattaagttttgatatactttggtctagtggtgttgatttgggtcctcggagtgtgtttcccca |
385 |
Q |
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| T |
30317793 |
atattgaagcttttaaaagttttaaggtaaataatgaattaagtttcgatatactttggtctagtggtgttgacttaagtcgtcggagtgtgtttcccct |
30317694 |
T |
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| Q |
386 |
taaagtttttagttcgattgtct |
408 |
Q |
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| T |
30317693 |
taaagtttctggttcgattgtct |
30317671 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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