View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10876_low_12 (Length: 239)
Name: NF10876_low_12
Description: NF10876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10876_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 167; Significance: 1e-89; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 45480163 - 45480383
Alignment:
| Q |
1 |
tggtttgttcaagttgaagactctttataatcaccataaagtgaggaaatgcactctcttttttaaatccgannnnnnnaaagtgaacaacttactttga |
100 |
Q |
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| T |
45480163 |
tggtttgttcaagttgaagactctttataatcaccataaagtgaggaaatgcaccctcttttttaaatccgatttttttaaagtgaacaacttactttga |
45480262 |
T |
|
| Q |
101 |
actgtaaaataagtattatcgatcaccaattaacaa---aacagtggtaattacaagtatattataacaaaaataatttaaacaatgtctgaaagacatc |
197 |
Q |
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| T |
45480263 |
agtgtaaaataagtattatcgatcaccaattaacaaatcaaaagtggtaattacaagtatattataacaaaaataattt-aacaatgtctgaaagacatc |
45480361 |
T |
|
| Q |
198 |
cccaaggtaaaatttaatgtgg |
219 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
45480362 |
cccaaggtaaaatttaatgtgg |
45480383 |
T |
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