View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10876_low_13 (Length: 231)
Name: NF10876_low_13
Description: NF10876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10876_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 78; Significance: 2e-36; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 13 - 114
Target Start/End: Original strand, 45666836 - 45666937
Alignment:
| Q |
13 |
atgaattaattatgggttgttaatgcatttcatcatgtgtttacgagtcgggttggatcggtttttgtcaaaatctgttacttaatctaatcaattttta |
112 |
Q |
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| T |
45666836 |
atgaattaattatggattgttaatgcatttcatcatgtgtttacgggtcggattggatcggtttttgtcaaaatctgttacttgttccaatcaattttta |
45666935 |
T |
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| Q |
113 |
tt |
114 |
Q |
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|| |
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| T |
45666936 |
tt |
45666937 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 13 - 114
Target Start/End: Original strand, 45666952 - 45667052
Alignment:
| Q |
13 |
atgaattaattatgggttgttaatgcatttcatcatgtgtttacgagtcgggttggatcggtttttgtcaaaatctgttacttaatctaatcaattttta |
112 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||| |||||| || |||||||||||| |
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| T |
45666952 |
atgaattagttatgggttgttaatgcatttcatcatgtgtttatgagtcgggttggatcggtttttgtc-aaatctattacttgttccaatcaattttta |
45667050 |
T |
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| Q |
113 |
tt |
114 |
Q |
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|| |
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| T |
45667051 |
tt |
45667052 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 13 - 120
Target Start/End: Original strand, 45667067 - 45667178
Alignment:
| Q |
13 |
atgaattaattatgggttgttaatgcatttcatcatgtgtttacgagtcgggttggatcgg-tttttgtcaaaatctgttactta---atctaatcaatt |
108 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||| ||| ||||||| |||| ||||||||||||||||||||||| |||||||||||| |
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| T |
45667067 |
atgaattagttatgggttgttaatgcatttcatcatgtgtttataagttgggttgggtcggttttttgtcaaaatctgttacttaatgatctaatcaatt |
45667166 |
T |
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| Q |
109 |
tttattagatag |
120 |
Q |
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||||||| |||| |
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| T |
45667167 |
tttattatatag |
45667178 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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