View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10876_low_14 (Length: 227)
Name: NF10876_low_14
Description: NF10876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10876_low_14 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 3 - 227
Target Start/End: Complemental strand, 5419359 - 5419135
Alignment:
| Q |
3 |
aaaaaatggggccaagatcctaaaattttaatcaagtccctaaacttctaaatgatttttaattagatccttacaaacttataaataatttgaattagat |
102 |
Q |
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| T |
5419359 |
aaaaaatagggccaagatcctaaacttttaatcaagtccctaaacttctaaatgatttttaattagatccttacaaacttataaataatttgaattagat |
5419260 |
T |
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| Q |
103 |
acttcaacttgtaaataaatttatctttaggttctacttctaattacaaattactaaaattcagtgatctaatttaattagtataattttttgtagttca |
202 |
Q |
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| T |
5419259 |
acttcaacttgtaaataaatttatctttaggttctacttctaattacaaattactaaaattcagtgatctaatttaattagtataattttttgtagttca |
5419160 |
T |
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| Q |
203 |
atattctatttaaaaatcttattta |
227 |
Q |
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||||||||||||||||||||||||| |
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| T |
5419159 |
atattctatttaaaaatcttattta |
5419135 |
T |
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Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 68
Target Start/End: Original strand, 9199227 - 9199271
Alignment:
| Q |
24 |
aaaattttaatcaagtccctaaacttctaaatgatttttaattag |
68 |
Q |
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||||||||||||||||| |||||||||||||| || | ||||||| |
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| T |
9199227 |
aaaattttaatcaagtctctaaacttctaaatcatatataattag |
9199271 |
T |
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