View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10876_low_2 (Length: 443)

Name: NF10876_low_2
Description: NF10876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10876_low_2
NF10876_low_2
[»] chr7 (1 HSPs)
chr7 (1-425)||(41329921-41330345)


Alignment Details
Target: chr7 (Bit Score: 349; Significance: 0; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 1 - 425
Target Start/End: Complemental strand, 41330345 - 41329921
Alignment:
Q  1 aatgacgagcactacgtggtgtttatcaatcaggcactaaagtggaaaagtggggatatatctccactcataagagaagttctatgtatggttcatatat 100  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41330345 aatgacgagcactacgtggtgtttatcaatcaggtactaaagtggaaaagtggggatatatctccactcataagagaagttctatgtatggttcatatat 41330246  T
Q  101 ctccacttatgtgagcttgaggcctacaacaaattgatcttcatagtctttggctgttgactcctgtcacgtctctttaaacagggttaatgattgttaa 200  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41330245 ctccacttatgtgagcttgaggcctacaacaaattgatcttcgtagtctttggctgttgactcctgtcacgtctctttaaacagggttaatgattgttaa 41330146  T
Q  201 ggggtggaaaaagggtccaacctgttgggacagttcgtttagtccgttattttttatggactgagctgaagttttaaactcgtctttttcagttggtcca 300  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| ||||||||| ||||| ||||||||    
T  41330145 gggttggaaaaagggtccaacctgttgggacagttcgtttagtccgttattttttacggactgagttgaagttttgaactcgtctctttcaattggtcca 41330046  T
Q  301 ctccgtttaacttgtttaaaaaactgttcggggtatggacagggagggctggccccttaacttgtcaatttgttatttattaannnnnnnncattcaacg 400  Q
    ||||||||| ||||||||||||||||||| || ||||||||||||||||||||||| ||||||||||||||||||||||||||        |||||||||    
T  41330045 ctccgtttagcttgtttaaaaaactgttccggatatggacagggagggctggccccctaacttgtcaatttgttatttattaattttttttcattcaacg 41329946  T
Q  401 cgttagataaaatttaaatgggagc 425  Q
    |||| ||||||||||||||||||||    
T  41329945 cgtttgataaaatttaaatgggagc 41329921  T

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