View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10876_low_3 (Length: 363)
Name: NF10876_low_3
Description: NF10876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10876_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 295; Significance: 1e-166; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 1 - 347
Target Start/End: Complemental strand, 9451873 - 9451527
Alignment:
| Q |
1 |
cctaacaaccttggtgagaatagcgtcggcaacggaaacggcagatgaaattattcaatgagataggaaaaaggtcgagagtgaagtgacgatgtgaatg |
100 |
Q |
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| T |
9451873 |
cctaacgaccttggtgagaatagtgtcggcaacggaaacggtagatgaaatttttcaatgagataggaaaagggttgagagagaagcgacgatgtgaatg |
9451774 |
T |
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| Q |
101 |
gtttctcagaggccaaaatatgaaatttaaagaacactgttaaggctttggaagatatattgcatagaaagtgttccatgaatgctacaaatgagctgct |
200 |
Q |
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| T |
9451773 |
gtttctcagaggccaaaatatgaaatttaaagaacaccgttaaggccttggaagaaatattgcatagaaagtgttccatgaatgctacaaatgagctgct |
9451674 |
T |
|
| Q |
201 |
ttagaagtagttgatgaattggaattaaaattgagaaaaggatagtagaattgcaatggagaagtgacattgggaatcagaacccacattgggaattaag |
300 |
Q |
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| T |
9451673 |
ttagaagtagttgatgaattggaattagaattgagaaaaggatagtagaattgcaatggagaagtgacattgggaattagaacccacattgggaattaag |
9451574 |
T |
|
| Q |
301 |
aaaaggatagtagaactgcaagttgttaatagaacacccatatatat |
347 |
Q |
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| T |
9451573 |
aaaaggatagtagaactgcaagttgttaatagaacacccatatatat |
9451527 |
T |
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