View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10876_low_4 (Length: 315)

Name: NF10876_low_4
Description: NF10876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10876_low_4
NF10876_low_4
[»] chr1 (4 HSPs)
chr1 (15-301)||(34989468-34989754)
chr1 (15-301)||(2305414-2305700)
chr1 (15-154)||(34975633-34975772)
chr1 (15-153)||(34980413-34980551)
[»] chr3 (18 HSPs)
chr3 (15-301)||(22656995-22657281)
chr3 (24-301)||(22620843-22621120)
chr3 (47-286)||(22615212-22615451)
chr3 (102-286)||(22648128-22648312)
chr3 (47-287)||(22115368-22115608)
chr3 (49-287)||(21930706-21930944)
chr3 (100-287)||(22034853-22035040)
chr3 (100-276)||(30989259-30989435)
chr3 (47-276)||(22357956-22358185)
chr3 (74-270)||(22431133-22431329)
chr3 (74-273)||(22367884-22368083)
chr3 (136-276)||(22187360-22187500)
chr3 (193-276)||(22436588-22436671)
chr3 (136-270)||(22028372-22028506)
chr3 (47-276)||(22458443-22458672)
chr3 (47-276)||(22481424-22481653)
chr3 (74-183)||(22630485-22630594)
chr3 (227-271)||(18966946-18966990)
[»] scaffold1439 (2 HSPs)
scaffold1439 (137-301)||(1522-1686)
scaffold1439 (59-153)||(1714-1808)
[»] chr5 (2 HSPs)
chr5 (109-288)||(40580333-40580512)
chr5 (80-163)||(40580244-40580327)


Alignment Details
Target: chr1 (Bit Score: 259; Significance: 1e-144; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 15 - 301
Target Start/End: Original strand, 34989468 - 34989754
Alignment:
Q  15 atcgaggtgcattgatttctgagttgataaagtacttgcagaaaaagaggtatatttttgtgtttgatgatgtatggaacacaagtttttgggatgagat 114  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  34989468 atcgaggtgcattgatttctgagttgagaaagtacttgcagaaaaagaggtatgtttttgtgtttgatgatgtatggaacacaagtttttgggatgagat 34989567  T
Q  115 tgaatatgatgtgagtgatgataaaaatggtagtaagatatttattaccagaagaaataaggatgttgccatgtattgtaagaaatcttcgtttattgaa 214  Q
    |||||||| |||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||    
T  34989568 tgaatatgttgtgagtgataataaaaatggtagtaagatatttattaccacaagaaataaggatgttgccatgtattgtaagaaatcttcatttattgaa 34989667  T
Q  215 gtgcatgaactacaacctttaactgaagaacaatcaattgatttgttcaataagaaggcatttcaatttgacttggaaggatgttgt 301  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34989668 gtgcatgaactacaaccattaactgaagaacaatcaattgatttgttcaataagaaggcatttcaatttgacttggaaggatgttgt 34989754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 15 - 301
Target Start/End: Complemental strand, 2305700 - 2305414
Alignment:
Q  15 atcgaggtgcattgatttctgagttgataaagtacttgcagaaaaagaggtatatttttgtgtttgatgatgtatggaacacaagtttttgggatgagat 114  Q
    ||||||||| |||||||| |||||||| ||||||||||||||| ||||||||| |||||||||||||| |||||||||||||||||||||||||||||||    
T  2305700 atcgaggtgaattgatttttgagttgagaaagtacttgcagaataagaggtatgtttttgtgtttgataatgtatggaacacaagtttttgggatgagat 2305601  T
Q  115 tgaatatgatgtgagtgatgataaaaatggtagtaagatatttattaccagaagaaataaggatgttgccatgtattgtaagaaatcttcgtttattgaa 214  Q
    |||||||| | |||||||| |||||||||||||||||||||||||||||| |||||||| |||||||||||| ||||||||||||||||| |||||| ||    
T  2305600 tgaatatgctatgagtgatcataaaaatggtagtaagatatttattaccacaagaaatatggatgttgccatatattgtaagaaatcttcttttattcaa 2305501  T
Q  215 gtgcatgaactacaacctttaactgaagaacaatcaattgatttgttcaataagaaggcatttcaatttgacttggaaggatgttgt 301  Q
    |||||||||||||||| ||||||||| ||| ||| | |||||||||| |||||||||||||||||||||||||| ||||||||||||    
T  2305500 gtgcatgaactacaacttttaactgaggaaaaataatttgatttgtttaataagaaggcatttcaatttgactttgaaggatgttgt 2305414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 15 - 154
Target Start/End: Original strand, 34975633 - 34975772
Alignment:
Q  15 atcgaggtgcattgatttctgagttgataaagtacttgcagaaaaagaggtatatttttgtgtttgatgatgtatggaacacaagtttttgggatgagat 114  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  34975633 atcgaggtgcattgatttctgagttgagaaagtacttgcagaaaaagaggtatgtttttgtgtttgatgatgtatggaacacaagtttttgggatgagat 34975732  T
Q  115 tgaatatgatgtgagtgatgataaaaatggtagtaagata 154  Q
    |||||||| |||||||||| ||||||||||||||||||||    
T  34975733 tgaatatgttgtgagtgataataaaaatggtagtaagata 34975772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 15 - 153
Target Start/End: Original strand, 34980413 - 34980551
Alignment:
Q  15 atcgaggtgcattgatttctgagttgataaagtacttgcagaaaaagaggtatatttttgtgtttgatgatgtatggaacacaagtttttgggatgagat 114  Q
    |||||| ||||||||||| |||||||| ||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  34980413 atcgagatgcattgatttatgagttgagaaattacttgcagaaaaagaggtatgtttttgtgtttgatgatgtatggaacacaagtttttgggatgagat 34980512  T
Q  115 tgaatatgatgtgagtgatgataaaaatggtagtaagat 153  Q
    |||||||| |||||||||| |||||||||||||||||||    
T  34980513 tgaatatgttgtgagtgataataaaaatggtagtaagat 34980551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 175; Significance: 3e-94; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 15 - 301
Target Start/End: Complemental strand, 22657281 - 22656995
Alignment:
Q  15 atcgaggtgcattgatttctgagttgataaagtacttgcagaaaaagaggtatatttttgtgtttgatgatgtatggaacacaagtttttgggatgagat 114  Q
    ||||||| ||||||||||||||| ||| ||| ||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||    
T  22657281 atcgaggcgcattgatttctgagctgagaaaatacttgcagaaaaagaggtatgtttttgtgtttgatgatgtatggaacaaaagtttttgggatgagat 22657182  T
Q  115 tgaatatgatgtgagtgatgataaaaatggtagtaagatatttattaccagaagaaataaggatgttgccatgtattgtaagaaatcttcgtttattgaa 214  Q
    |||||||| |||  ||||| |||||||||| ||||||||||||||||| | |||||||| |||||||||  ||||||||||||||||||| |||||||||    
T  22657181 tgaatatgctgttggtgatcataaaaatgggagtaagatatttattacaacaagaaatatggatgttgcggtgtattgtaagaaatcttcttttattgaa 22657082  T
Q  215 gtgcatgaactacaacctttaactgaagaacaatcaattgatttgttcaataagaaggcatttcaatttgacttggaaggatgttgt 301  Q
    |||||||||||||| |||||||| | |||||||||  |||| ||||| ||||||||||| ||||||||||||||  | |||||||||    
T  22657081 gtgcatgaactacatcctttaacagtagaacaatcttttgagttgtttaataagaaggcctttcaatttgactttaatggatgttgt 22656995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 24 - 301
Target Start/End: Complemental strand, 22621120 - 22620843
Alignment:
Q  24 cattgatttctgagttgataaagtacttgcagaaaaagaggtatatttttgtgtttgatgatgtatggaacacaagtttttgggatgagattgaatatga 123  Q
    ||||||||||| |||||| |||  |||||||  ||||||||||| ||||||| |||||||||||||||| || |  ||||||| |||| || ||  |||     
T  22621120 cattgatttctaagttgagaaaccacttgcaacaaaagaggtatgtttttgtatttgatgatgtatggaccatagatttttggaatgaaatagagcatgt 22621021  T
Q  124 tgtgagtgatgataaaaatggtagtaagatatttattaccagaagaaataaggatgttgccatgtattgtaagaaatcttcgtttattgaagtgcatgaa 223  Q
    ||||| |||| |||||||||| ||||||||||| ||||| | ||||| || ||||||||| || |||||||| |||||||| |||||||| |||||||||    
T  22621020 tgtgattgataataaaaatgggagtaagatattgattacaacaagaagtatggatgttgctatttattgtaaaaaatcttcttttattgaggtgcatgaa 22620921  T
Q  224 ctacaacctttaactgaagaacaatcaattgatttgttcaataagaaggcatttcaatttgacttggaaggatgttgt 301  Q
    ||||||||||||||||| ||||||||  |||| |||||||||||||||| ||||| ||||||||| || ||| |||||    
T  22620920 ctacaacctttaactgaggaacaatcttttgagttgttcaataagaaggtatttcgatttgactttgatggaagttgt 22620843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 47 - 286
Target Start/End: Complemental strand, 22615451 - 22615212
Alignment:
Q  47 tacttgcagaaaaagaggtatatttttgtgtttgatgatgtatggaacacaagtttttgggatgagattgaatatgatgtgagtgatgataaaaatggta 146  Q
    ||||||||| ||||||||||  || ||||||||||||||||||||||||    ||||||| |||||||||||| || ||| | |||| |||||||||| |    
T  22615451 tacttgcagcaaaagaggtacgttgttgtgtttgatgatgtatggaacatgcatttttggaatgagattgaatctgctgtaattgataataaaaatggaa 22615352  T
Q  147 gtaagatatttattaccagaagaaataaggatgttgccatgtattgtaagaaatcttcgtttattgaagtgcatgaactacaacctttaactgaagaaca 246  Q
    ||||||||||||| || | ||| ||||  ||||||||  | | |||||||| |||||||||  |  ||||||||||  | ||||||||||||||||||||    
T  22615351 gtaagatatttataacaacaaggaatatagatgttgcactttcttgtaagagatcttcgttagtcaaagtgcatgagttgcaacctttaactgaagaaca 22615252  T
Q  247 atcaattgatttgttcaataagaaggcatttcaatttgac 286  Q
    |||  | || ||||| ||||||||||||||||||||||||    
T  22615251 atctctggagttgtttaataagaaggcatttcaatttgac 22615212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 102 - 286
Target Start/End: Complemental strand, 22648312 - 22648128
Alignment:
Q  102 tttgggatgagattgaatatgatgtgagtgatgataaaaatggtagtaagatatttattaccagaagaaataaggatgttgccatgtattgtaagaaatc 201  Q
    ||||||||||||||||| |||   ||| |||| |||||||||| ||||||||||||||||| | |||||||| |||||||||||| ||||||||||||||    
T  22648312 tttgggatgagattgaaaatgcattgattgataataaaaatgggagtaagatatttattacaacaagaaatatggatgttgccatatattgtaagaaatc 22648213  T
Q  202 ttcgtttattgaagtgcatgaactacaacctttaactgaagaacaatcaattgatttgttcaataagaaggcatttcaatttgac 286  Q
    ||| || ||||||||| ||||| | |||||||||||  | ||||||||  |||| |||||||| |||||| ||||||| ||||||    
T  22648212 ttctttcattgaagtgtatgaattgcaacctttaacaaatgaacaatcttttgagttgttcaacaagaagacatttcagtttgac 22648128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 47 - 287
Target Start/End: Original strand, 22115368 - 22115608
Alignment:
Q  47 tacttgcagaaaaagaggtatatttttgtgtttgatgatgtatggaacacaagtttttgggatgagattgaatatgatgtgagtgatgataaaaatggta 146  Q
    ||||||||||||||||||||  || | |||||||||||||| |||||   |  |||||||||||| ||||||| |  ||| | ||||  ||||||||| |    
T  22115368 tacttgcagaaaaagaggtacgttgtcgtgtttgatgatgtttggaatgtacatttttgggatgatattgaattttctgtaattgatagtaaaaatggaa 22115467  T
Q  147 gtaagatatttattaccagaagaaataaggatgttgccatgtattgtaagaaatcttcgtttattgaagtgcatgaactacaacctttaactgaagaaca 246  Q
    ||||||||||||| || | |||||| | ||||||||   ||| |||||| |||||||| || ||||| |||| | | || |||||||||||| |||||||    
T  22115468 gtaagatatttataacaacaagaaacatggatgttgtgttgtcttgtaaaaaatcttctttcattgaggtgctttagctgcaacctttaactcaagaaca 22115567  T
Q  247 atcaattgatttgttcaataagaaggcatttcaatttgact 287  Q
    |||| |  | ||||||||||||||||||||  |||||||||    
T  22115568 atcattgaagttgttcaataagaaggcattcaaatttgact 22115608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 49 - 287
Target Start/End: Original strand, 21930706 - 21930944
Alignment:
Q  49 cttgcagaaaaagaggtatatttttgtgtttgatgatgtatggaacacaagtttttgggatgagattgaatatgatgtgagtgatgataaaaatggtagt 148  Q
    ||||||||||||||||||| || | |||||||||||||| |||||   |  |||||||||||| ||||||| || ||  | ||||  ||||||||| |||    
T  21930706 cttgcagaaaaagaggtatgttgtcgtgtttgatgatgtttggaatgtacatttttgggatgatattgaatttgctgcaattgatagtaaaaatggaagt 21930805  T
Q  149 aagatatttattaccagaagaaataaggatgttgccatgtattgtaagaaatcttcgtttattgaagtgcatgaactacaacctttaactgaagaacaat 248  Q
    ||||||||||| || | ||| || | ||||||||   ||| |||||| |||||||| || |||||| ||| |||  | |||||||||||| | |||||||    
T  21930806 aagatatttataacaacaaggaacatggatgttgtggtgtcttgtaaaaaatcttctttcattgaaatgcttgagttgcaacctttaactcatgaacaat 21930905  T
Q  249 caattgatttgttcaataagaaggcatttcaatttgact 287  Q
    |  | || ||||||||||||||||||||  |||||||||    
T  21930906 ctttggagttgttcaataagaaggcattcaaatttgact 21930944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 100 - 287
Target Start/End: Original strand, 22034853 - 22035040
Alignment:
Q  100 tttttgggatgagattgaatatgatgtgagtgatgataaaaatggtagtaagatatttattaccagaagaaataaggatgttgccatgtattgtaagaaa 199  Q
    |||||||||||| ||||||| |  ||| | ||||  ||||||||| |||||||||||||| || | |||||| | ||||||||   ||| |||||| |||    
T  22034853 tttttgggatgatattgaattttctgtaattgatagtaaaaatggaagtaagatatttataacaacaagaaacatggatgttgtgttgtcttgtaaaaaa 22034952  T
Q  200 tcttcgtttattgaagtgcatgaactacaacctttaactgaagaacaatcaattgatttgttcaataagaaggcatttcaatttgact 287  Q
    ||||| || ||||| |||| ||| || |||||||||||| ||||||||||| |  | ||||||||||||||||||||  |||||||||    
T  22034953 tcttctttcattgaggtgcttgagctgcaacctttaactcaagaacaatcattgaagttgttcaataagaaggcattcaaatttgact 22035040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 100 - 276
Target Start/End: Complemental strand, 30989435 - 30989259
Alignment:
Q  100 tttttgggatgagattgaatatgatgtgagtgatgataaaaatggtagtaagatatttattaccagaagaaataaggatgttgccatgtattgtaagaaa 199  Q
    |||||||||||| ||||||| || ||| | |||| |||||||||| |||||||||||||| || | ||||||    |||||||   ||| |||||| |||    
T  30989435 tttttgggatgatattgaatttgctgtaattgataataaaaatggaagtaagatatttatcacaacaagaaacctagatgttgtgttgtcttgtaaaaaa 30989336  T
Q  200 tcttcgtttattgaagtgcatgaactacaacctttaactgaagaacaatcaattgatttgttcaataagaaggcatt 276  Q
    ||||| | ||||||||||| |||  | |||||||||| |||| |||||||  | || ||||||||||||||||||||    
T  30989335 tcttcttatattgaagtgcttgagttgcaacctttaaatgaacaacaatctttggagttgttcaataagaaggcatt 30989259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 47 - 276
Target Start/End: Complemental strand, 22358185 - 22357956
Alignment:
Q  47 tacttgcagaaaaagaggtatatttttgtgtttgatgatgtatggaacacaagtttttgggatgagattgaatatgatgtgagtgatgataaaaatggta 146  Q
    ||||||||  |||| |||||| || | |||||||||||||||||| |  ||  ||||| | |||| ||||||| || | ||| |||| | ||||| |||     
T  22358185 tacttgcaagaaaaaaggtatgttgtagtgtttgatgatgtatgggagtcacattttttgcatgatattgaatttgctatgattgataacaaaaagggtt 22358086  T
Q  147 gtaagatatttattaccagaagaaataaggatgttgccatgtattgtaagaaatcttcgtttattgaagtgcatgaactacaacctttaactgaagaaca 246  Q
     || |||||| || || | |||||| | ||||||||| |    ||||||||||||||| ||| |||||||| |||||||| ||  ||| |||| ||||||    
T  22358085 ctaggatattaatcactacaagaaacatggatgttgcgaatacttgtaagaaatcttcttttgttgaagtgtatgaactaaaaggtttgactgtagaaca 22357986  T
Q  247 atcaattgatttgttcaataagaaggcatt 276  Q
    |||  |||| ||||||||||||||||||||    
T  22357985 atcttttgagttgttcaataagaaggcatt 22357956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 74 - 270
Target Start/End: Complemental strand, 22431329 - 22431133
Alignment:
Q  74 gtgtttgatgatgtatggaacacaagtttttgggatgagattgaatatgatgtgagtgatgataaaaatggtagtaagatatttattaccagaagaaata 173  Q
    |||||||||||||||||| |  ||| ||||||| |||| ||||||| || | ||| |||| | ||||||||| |||||||||| || || | |||||| |    
T  22431329 gtgtttgatgatgtatgggagtcaaatttttggtatgatattgaatttgctatgattgataacaaaaatggttgtaagatattaatcacaacaagaaaca 22431230  T
Q  174 aggatgttg-ccatgtattgtaagaaatcttcgtttattgaagtgcatgaactacaacctttaactgaagaacaatcaattgatttgttcaataagaa 270  Q
    |||||| ||   |||  ||||||||||||||| ||| ||||||||||||||||  ||  |||||| |||||| ||||  | || ||||||||||||||    
T  22431229 aggatggtgtagatg-cttgtaagaaatcttcttttgttgaagtgcatgaacttaaaggtttaaccgaagaaaaatctttagaattgttcaataagaa 22431133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 74 - 273
Target Start/End: Complemental strand, 22368083 - 22367884
Alignment:
Q  74 gtgtttgatgatgtatggaacacaagtttttgggatgagattgaatatgatgtgagtgatgataaaaatggtagtaagatatttattaccagaagaaata 173  Q
    |||||||||||||||||| || ||  ||||||| |||| ||||||| |  | ||| |||| | ||||||||| |||||||||| || || | ||||||      
T  22368083 gtgtttgatgatgtatgggactcacatttttggaatgatattgaattttctatgattgataacaaaaatggttgtaagatattaatcacaacaagaaacg 22367984  T
Q  174 aggatgttgcc-atgtattgtaagaaatcttcgtttattgaagtgcatgaactacaacctttaactgaagaacaatcaattgatttgttcaataagaagg 272  Q
    ||||||||||  |||  ||||||||||||||| ||| ||||||||||| ||||  ||  ||||| ||||||| ||||  | || ||||||||||||||||    
T  22367983 aggatgttgcagatgc-ttgtaagaaatcttcttttgttgaagtgcataaacttgaaggtttaagtgaagaaaaatctttagaattgttcaataagaagg 22367885  T

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Target: chr3; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 136 - 276
Target Start/End: Original strand, 22187360 - 22187500
Alignment:
Q  136 taaaaatggtagtaagatatttattaccagaagaaataaggatgttgccatgtattgtaagaaatcttcgtttattgaagtgcatgaactacaaccttta 235  Q
    ||||||||| |||| ||||||||| || | ||| || ||| ||||||   ||| ||||||  | ||||| |||||||| ||||||||||| |||||||||    
T  22187360 taaaaatggaagtaggatatttataacaacaaggaaaaagaatgttgtggtgtcttgtaaagagtcttcttttattgaggtgcatgaactgcaaccttta 22187459  T
Q  236 actgaagaacaatcaattgatttgttcaataagaaggcatt 276  Q
     ||  |||||||||  | || ||||||||||||||||||||    
T  22187460 tctctagaacaatctttggagttgttcaataagaaggcatt 22187500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 193 - 276
Target Start/End: Complemental strand, 22436671 - 22436588
Alignment:
Q  193 taagaaatcttcgtttattgaagtgcatgaactacaacctttaactgaagaacaatcaattgatttgttcaataagaaggcatt 276  Q
    ||||| |||||| ||| ||||||| |||||||| |||  ||||||||||||| ||||  | || ||||||||||||||||||||    
T  22436671 taagagatcttcttttgttgaagtacatgaacttcaaggtttaactgaagaaaaatctttagaattgttcaataagaaggcatt 22436588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 136 - 270
Target Start/End: Original strand, 22028372 - 22028506
Alignment:
Q  136 taaaaatggtagtaagatatttattaccagaagaaataaggatgttgccatgtattgtaagaaatcttcgtttattgaagtgcatgaactacaaccttta 235  Q
    ||||||||| |||| ||||||||| || | ||| || ||| ||||||   ||| ||||||  | ||||| |||||||| ||||||||||| |||||||||    
T  22028372 taaaaatggaagtaggatatttataacaacaaggaaaaagaatgttgtggtgtcttgtaaagagtcttcttttattgaggtgcatgaactgcaaccttta 22028471  T
Q  236 actgaagaacaatcaattgatttgttcaataagaa 270  Q
     ||  |||||||||  | || ||||||||||||||    
T  22028472 tctctagaacaatctttggagttgttcaataagaa 22028506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 47 - 276
Target Start/End: Complemental strand, 22458672 - 22458443
Alignment:
Q  47 tacttgcagaaaaagaggtatatttttgtgtttgatgatgtatggaacacaagtttttgggatgagattgaatatgatgtgagtgatgataaaaatggta 146  Q
    ||||||||| |||| |||||| || | || |||||||||||||||| |  |  |||||||||||| ||  ||| || | ||| |||| ||||||| |||     
T  22458672 tacttgcaggaaaaaaggtatgttatagtttttgatgatgtatggagcttacatttttgggatgatatcaaatttgctatgattgataataaaaagggtt 22458573  T
Q  147 gtaagatatttattaccagaagaaataaggatgttgc-catgtattgtaagaaatcttcgtttattgaagtgcatgaactacaacctttaactgaagaac 245  Q
    |||||||||| || || | |||||| | |||||||||  ||| | |||||||||||||| ||| |||||||| ||||| |  ||  |||  ||||| |||    
T  22458572 gtaagatattaatcacaacaagaaacatggatgttgcaaatgca-tgtaagaaatcttcttttgttgaagtgtatgaaatgaaaggtttggctgaacaac 22458474  T
Q  246 aatcaattgatttgttcaataagaaggcatt 276  Q
    ||||  | || ||||||||||||||| ||||    
T  22458473 aatctttggagttgttcaataagaagacatt 22458443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 47 - 276
Target Start/End: Complemental strand, 22481653 - 22481424
Alignment:
Q  47 tacttgcagaaaaagaggtatatttttgtgtttgatgatgtatggaacacaagtttttgggatgagattgaatatgatgtgagtgatgataaaaatggta 146  Q
    ||||||||| |||| |||||| || | || |||||||||||||||| |  |  |||||||||||| ||  ||| || | ||| |||| ||||||| |||     
T  22481653 tacttgcaggaaaaaaggtatgttatagtttttgatgatgtatggagcttacatttttgggatgatatcaaatttgctatgattgataataaaaagggtt 22481554  T
Q  147 gtaagatatttattaccagaagaaataaggatgttgc-catgtattgtaagaaatcttcgtttattgaagtgcatgaactacaacctttaactgaagaac 245  Q
    |||||||||| || || | |||||| | |||||||||  ||| | |||||||||||||| ||| |||||||| ||||| |  ||  |||  ||||| |||    
T  22481553 gtaagatattaatcacaacaagaaacatggatgttgcaaatgca-tgtaagaaatcttcttttgttgaagtgtatgaaatgaaaggtttggctgaacaac 22481455  T
Q  246 aatcaattgatttgttcaataagaaggcatt 276  Q
    ||||  | || ||||||||||||||| ||||    
T  22481454 aatctttggagttgttcaataagaagacatt 22481424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 74 - 183
Target Start/End: Complemental strand, 22630594 - 22630485
Alignment:
Q  74 gtgtttgatgatgtatggaacacaagtttttgggatgagattgaatatgatgtgagtgatgataaaaatggtagtaagatatttattaccagaagaaata 173  Q
    |||||||||||||||||| |  ||   |||||| |||| ||||||| || | ||| |||| | ||||||||| |||||||||| || || | |||||| |    
T  22630594 gtgtttgatgatgtatgggaggcacaattttggtatgatattgaatttgctatgattgataacaaaaatggttgtaagatattaatcacaacaagaaaca 22630495  T
Q  174 aggatgttgc 183  Q
    ||||||||||    
T  22630494 aggatgttgc 22630485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 227 - 271
Target Start/End: Complemental strand, 18966990 - 18966946
Alignment:
Q  227 caacctttaactgaagaacaatcaattgatttgttcaataagaag 271  Q
    ||||||||||| ||||||||||| || || |||||||||||||||    
T  18966990 caacctttaaccgaagaacaatctatagagttgttcaataagaag 18966946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1439 (Bit Score: 133; Significance: 4e-69; HSPs: 2)
Name: scaffold1439
Description:

Target: scaffold1439; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 137 - 301
Target Start/End: Complemental strand, 1686 - 1522
Alignment:
Q  137 aaaaatggtagtaagatatttattaccagaagaaataaggatgttgccatgtattgtaagaaatcttcgtttattgaagtgcatgaactacaacctttaa 236  Q
    |||||||||||||||||||||||||||| |||||||| |||||||||  ||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  1686 aaaaatggtagtaagatatttattaccacaagaaatatggatgttgctgtgtattgtaagaaatcttcttttattgaagtgcatgaactacaacctttaa 1587  T
Q  237 ctgaagaacaatcaattgatttgttcaataagaaggcatttcaatttgacttggaaggatgttgt 301  Q
    |||||||| ||||| |||||||||| |||||||||||||||||||||||||||||||||||||||    
T  1586 ctgaagaaaaatcatttgatttgtttaataagaaggcatttcaatttgacttggaaggatgttgt 1522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1439; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 59 - 153
Target Start/End: Complemental strand, 1808 - 1714
Alignment:
Q  59 aagaggtatatttttgtgtttgatgatgtatggaacacaagtttttgggatgagattgaatatgatgtgagtgatgataaaaatggtagtaagat 153  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||    
T  1808 aagaggtatgtttttgtgtttgatgatgtatggaacacaagtttttgggatgagattgaatatgttgtgagtgataataaaaatggtagtaagat 1714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 120; Significance: 2e-61; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 109 - 288
Target Start/End: Original strand, 40580333 - 40580512
Alignment:
Q  109 tgagattgaatatgatgtgagtgatgataaaaatggtagtaagatatttattaccagaagaaataaggatgttgccatgtattgtaagaaatcttcgttt 208  Q
    |||||||||||||| | |||||||| |||||||||||||||||||||||||||||  ||||| || |||||||||  ||||||||||||||| ||| |||    
T  40580333 tgagattgaatatgctatgagtgataataaaaatggtagtaagatatttattacctcaagaagtatggatgttgcagtgtattgtaagaaattttctttt 40580432  T
Q  209 attgaagtgcatgaactacaacctttaactgaagaacaatcaattgatttgttcaataagaaggcatttcaatttgactt 288  Q
    ||||||||||||||||||||||||||||| |||||| ||||| ||||||||||||| |||||||||||||||||||||||    
T  40580433 attgaagtgcatgaactacaacctttaacagaagaaaaatcatttgatttgttcaacaagaaggcatttcaatttgactt 40580512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 80 - 163
Target Start/End: Original strand, 40580244 - 40580327
Alignment:
Q  80 gatgatgtatggaacacaagtttttgggatgagattgaatatgatgtgagtgatgataaaaatggtagtaagatatttattacc 163  Q
    |||||||||||||||| ||||||||||| ||| |||||||||| | |||||||| |||||||||||||||||||||||||||||    
T  40580244 gatgatgtatggaacaaaagtttttggggtgatattgaatatgctatgagtgataataaaaatggtagtaagatatttattacc 40580327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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