View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10876_low_5 (Length: 299)
Name: NF10876_low_5
Description: NF10876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10876_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 278; Significance: 1e-155; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 1 - 282
Target Start/End: Original strand, 28936387 - 28936668
Alignment:
| Q |
1 |
attacagaaggaggcaaggtaaatgctgtgtttttcactattggcaattttacagtgtgaaagtgtcgtcttttgtgtgtgatctcgcataatcaaaatc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28936387 |
attacagaaggaggcaaggtaaatgctgtgtttttcactattggcaattttacagtgtgaaagtgtcgtcttttgtgtgtgatctcgcataatcaaaatc |
28936486 |
T |
|
| Q |
101 |
agaatttgtaattctaaattgtcaaaatattttaaatgccatgcgactttgcaaatttgtcacgttttccgttaatcttgatgtaatttgggttcattca |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
28936487 |
agaatttgtaattctaaattgtcaaaatattttaaatgccatgcgactttgcaaatttgtcacgttttccgttaatcttgatgtaatttgggtccattca |
28936586 |
T |
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| Q |
201 |
gttatgtgttgggggtcaattttctgtgtttgctcatgtctctcctatctatcctatctataatagaaggcatgcatcaagt |
282 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28936587 |
gttatgtgttgggggtcaattttctgtgtttgctcatgtctctcctatctatcctatctataatagaaggcatgcatcaagt |
28936668 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 10189708 - 10189742
Alignment:
| Q |
1 |
attacagaaggaggcaaggtaaatgctgtgttttt |
35 |
Q |
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||||||||||||||||||||||||||||| ||||| |
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| T |
10189708 |
attacagaaggaggcaaggtaaatgctgtattttt |
10189742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 156 - 205
Target Start/End: Original strand, 10189888 - 10189937
Alignment:
| Q |
156 |
tttgtcacgttttccgttaatcttgatgtaatttgggttcattcagttat |
205 |
Q |
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||||||| |||||||||| ||||||| |||||||||| ||||||||||| |
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| T |
10189888 |
tttgtcattttttccgttattcttgatataatttgggtccattcagttat |
10189937 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 35118055 - 35118021
Alignment:
| Q |
1 |
attacagaaggaggcaaggtaaatgctgtgttttt |
35 |
Q |
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||||||||||||||||||||||||||||| ||||| |
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| T |
35118055 |
attacagaaggaggcaaggtaaatgctgtattttt |
35118021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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