View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10876_low_7 (Length: 264)
Name: NF10876_low_7
Description: NF10876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10876_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 245
Target Start/End: Original strand, 10681793 - 10682035
Alignment:
| Q |
1 |
ggaggaggaggagaaactagatactaatattgagtcaaaggttgatgaagaaaatggtgtttcattggtgacagggtctaataccaaaactgaaaatgat |
100 |
Q |
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| T |
10681793 |
ggaggagaaggagaaactagatactaacattgtgtcaaagatggatgaagaaaatggtgtttcattattgacagggtctaataccaaaactgaaaatgat |
10681892 |
T |
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| Q |
101 |
acataggatgaattttaatttatatatatatgatgttgatagtaatgtgattggtgtgtttgtaaaagtgatgtttctctatttttaacagtccatatat |
200 |
Q |
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| T |
10681893 |
acataggatgaattttaatttatatatat--ggtgttgatagtaatgtgattggtgtgtttgtaaaagtgatgtttctctatttttaacagtccatatat |
10681990 |
T |
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| Q |
201 |
atgtggtgtgattaattaaaatatgatgattgctttggaatttcc |
245 |
Q |
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| T |
10681991 |
atgtggtgtgattaattaaaatatgatgattgctttggaatttcc |
10682035 |
T |
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