View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10876_low_8 (Length: 243)
Name: NF10876_low_8
Description: NF10876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10876_low_8 |
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| [»] scaffold2079 (1 HSPs) |
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| [»] chr7 (5 HSPs) |
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| [»] scaffold1112 (1 HSPs) |
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Alignment Details
Target: scaffold2079 (Bit Score: 175; Significance: 2e-94; HSPs: 1)
Name: scaffold2079
Description:
Target: scaffold2079; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 20 - 243
Target Start/End: Complemental strand, 674 - 449
Alignment:
| Q |
20 |
atgagtacaacacatgcttcaatattgctttta--gagttgaggtttggaaaaagagctatgaagaaaaaacatggaaaaggagctatgaaacaatttgc |
117 |
Q |
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||||||||||||||| ||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
674 |
atgagtacaacacattcttcaatattgcttttatagagtcgaggtttggaaaaagagctatgaagaaaaaacatggaaaaggagctatgaaacaatttgc |
575 |
T |
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| Q |
118 |
atgagacagtgacccataaaaacgtttaatacgaattcgttttacactatactcgattgaactttcttgtccaacgaacnnnnnnnnttgaacctgtccc |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| | ||||||||||||| |
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| T |
574 |
atgagacagtgacccataaaaacgtttaatacgaattcgttttatactatactcgattgaactttcttgtccaacgagcaaaaacaattgaacctgtccc |
475 |
T |
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| Q |
218 |
accaaatagattccatttattccttc |
243 |
Q |
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|||||||||||||||||||||||||| |
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| T |
474 |
accaaatagattccatttattccttc |
449 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 88; Significance: 2e-42; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 98 - 243
Target Start/End: Complemental strand, 6242411 - 6242262
Alignment:
| Q |
98 |
ggagctatgaaacaatttgcatgagacagtgaccca-taaaaacgtttaatacgaattcgttttacactata---ctcgattgaactttcttgtccaacg |
193 |
Q |
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||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||| |||||| |||||||||| |||||||||||||| |
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| T |
6242411 |
ggagctatgaaacaatttggatgagacagtgacccattaaaaacgtttaatacgaattcgttttatactatagttctcgattgaaatttcttgtccaacg |
6242312 |
T |
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| Q |
194 |
aacnnnnnnnnttgaacctgtcccaccaaatagattccatttattccttc |
243 |
Q |
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| T |
6242311 |
agcaaagaaaattgaacctgtcccaccaaatagattccatttattccttc |
6242262 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 20 - 153
Target Start/End: Original strand, 6333820 - 6333961
Alignment:
| Q |
20 |
atgagtacaacacatgcttcaatattgctttt--------agagttgaggtttggaaaaagagctatgaagaaaaaacatggaaaaggagctatgaaaca |
111 |
Q |
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||||||||||||||| |||||||||||||||| | ||||||| ||||||||||||| ||||||||||||||| |||||| ||| ||||| ||| |
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| T |
6333820 |
atgagtacaacacattcttcaatattgcttttcttatataatagttgagttttggaaaaagagatatgaagaaaaaacagggaaaaagaggtatgacaca |
6333919 |
T |
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| Q |
112 |
atttgcatgagacagtgacccataaaaacgtttaatacgaat |
153 |
Q |
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| T |
6333920 |
atttggatgagaaagtgacccatttaaacgtttaatacgaat |
6333961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 23 - 67
Target Start/End: Complemental strand, 6242455 - 6242409
Alignment:
| Q |
23 |
agtacaacacatgcttcaatattgcttt--tagagttgaggtttgga |
67 |
Q |
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| T |
6242455 |
agtacaacacattcttcaatattgcttttatagagttgaggtttgga |
6242409 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 161
Target Start/End: Original strand, 6330641 - 6330676
Alignment:
| Q |
125 |
agtgacccataaaaacgtttaatacgaattcgtttta |
161 |
Q |
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| T |
6330641 |
agtgacccataaaa-cgtttaatacgaattcgtttta |
6330676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 161
Target Start/End: Original strand, 6347119 - 6347154
Alignment:
| Q |
125 |
agtgacccataaaaacgtttaatacgaattcgtttta |
161 |
Q |
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| T |
6347119 |
agtgacccataaaa-cgtttaatacgaattcgtttta |
6347154 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1112 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold1112
Description:
Target: scaffold1112; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 125 - 166
Target Start/End: Complemental strand, 161 - 121
Alignment:
| Q |
125 |
agtgacccataaaaacgtttaatacgaattcgttttacacta |
166 |
Q |
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|||||||||||||| |||||||||||||||||||||| |||| |
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| T |
161 |
agtgacccataaaa-cgtttaatacgaattcgttttatacta |
121 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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