View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10877_high_1 (Length: 382)
Name: NF10877_high_1
Description: NF10877
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10877_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 344; Significance: 0; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 12 - 367
Target Start/End: Complemental strand, 29158383 - 29158028
Alignment:
| Q |
12 |
gatgaacaagaaggcaatgatgatgaagttagctttgttggttttcctcttgagcttcacttcaaccatggttgatgctcgtttcgatcgggcatccttc |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29158383 |
gatgaacaagaaggcaatgatgatgaagttagctttgttggttttcctcttgagcttcacttcaaccatggttgatgctcgtttcgatcgggcatccttc |
29158284 |
T |
|
| Q |
112 |
atcactcaactgctttccaatggtgaagctaataccaaatccacaacaacagcatgctgtgatttctgcccttgcacaagatcaatcccacctcaatgtc |
211 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29158283 |
atcactcaactgctctccaatggtgaagctaataccaaatccacaacaacagcatgctgtgatttctgcccttgcacaagatcaatcccacctcaatgtc |
29158184 |
T |
|
| Q |
212 |
agtgtactgatgttagagaaaaatgtcactcagcttgcaaaagttgcctttgcacaaggtcttttcctccacagtgtcgttgctatgatatcactaactt |
311 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29158183 |
agtgtactgatgttaaagaaaaatgtcactcagcttgcaaaagttgcctttgcacacggtcttttcctccacagtgtcgttgctatgatatcactaactt |
29158084 |
T |
|
| Q |
312 |
ctgctatccatcatgtagttaattaactatgtaattaaccatgcatgtgatgtgag |
367 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29158083 |
ctgctatccatcatgtagttaattaactatgtaattaaccatgcatgtgatgtgag |
29158028 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 12 - 318
Target Start/End: Complemental strand, 29206989 - 29206677
Alignment:
| Q |
12 |
gatgaacaagaaggcaatgatgatgaagttagctttgttggttttcctcttgagcttcacttcaaccatggttgatgctcgtttcgatcgggcatccttc |
111 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||| ||| ||||||||||||| | ||||||||||||||||| | |||||||| |
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| T |
29206989 |
gatgaacaagaaggcaatggtgatgaagttagctttgttggttttccttttgggcttcacttcaactgttgttgatgctcgtttcgacggatcatccttc |
29206890 |
T |
|
| Q |
112 |
atcactcaactgctttccaatggtgaagctaatacc------aaatccacaacaacagcatgctgtgatttctgcccttgcacaagatcaatcccacctc |
205 |
Q |
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|||||||||||||| |||||||||||||||| | | |||||||||||||||||||||||| || |||||||||||||| |||||| || |||| |
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| T |
29206889 |
atcactcaactgctctccaatggtgaagctacttacgaagtaaaatccacaacaacagcatgctgtaatagctgcccttgcacaaaatcaattcctcctc |
29206790 |
T |
|
| Q |
206 |
aatgtcagtgtactgatgttagagaaaaatgtcactcagcttgcaaaagttgcctttgcacaaggtcttttcctccacagtgtcgttgctatgatatcac |
305 |
Q |
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| ||||| ||| ||||| || |||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| |||||| ||||| ||| |
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| T |
29206789 |
agtgtcactgtgctgatattggagaaaaatgtcactcagcttgcaaaagatgcctttgcacaagatcttttcctccacagtgccgttgcactgataccac |
29206690 |
T |
|
| Q |
306 |
taacttctgctat |
318 |
Q |
| |
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| | ||||||||| |
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| T |
29206689 |
tgatttctgctat |
29206677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 154 - 321
Target Start/End: Complemental strand, 29145110 - 29144943
Alignment:
| Q |
154 |
acaacaacagcatgctgtgatttctgcccttgcacaagatcaatcccacctcaatgtcagtgtactgatgttagagaaaaatgtcactcagcttgcaaaa |
253 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||| ||||||||| |||||||| || ||||||||| || |||||| |||||||||||||||||||| |
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| T |
29145110 |
acaacaacagcatgctgtgattcctgcccttgcacaaaatcaatccctcctcaatgccattgtactgatattggagaaacatgtcactcagcttgcaaaa |
29145011 |
T |
|
| Q |
254 |
gttgcctttgcacaaggtcttttcctccacagtgtcgttgctatgatatcactaacttctgctatcca |
321 |
Q |
| |
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| || |||||||||| ||| ||||||||||||||| ||| |||||||||| |||||||||||||| |
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| T |
29145010 |
gctgtctttgcacaaaatctattcctccacagtgtcactgcgctgatatcactgacttctgctatcca |
29144943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 30 - 366
Target Start/End: Complemental strand, 29162036 - 29161697
Alignment:
| Q |
30 |
gatgatgaagttagctttgttggttttcctcttgagcttcacttcaaccatggttgatgctcgtttcgatcgggcatccttcatcactcaactgctttcc |
129 |
Q |
| |
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|||||||||||||||||| |||||||| || ||| ||||||||||||| | ||||||||||||||||||| |||||||||| |||||| | | || |
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| T |
29162036 |
gatgatgaagttagctttattggtttttcttttgggcttcacttcaactgttgttgatgctcgtttcgatccaacatccttcataactcaagtaatctca |
29161937 |
T |
|
| Q |
130 |
aatggtgaagct------aataccaaatccacaacaacagcatgctgtgatttctgcccttgcacaagatcaatcccacctcaatgt-cagtgtactgat |
222 |
Q |
| |
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|||||||||||| || ||||||||||||||||| ||||||| || ||||| |||||||||||| |||||| |||| |||||||||| |
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| T |
29161936 |
aatggtgaagctgcttacgatgtcaaatccacaacaacaggatgctgtaatagctgccaatgcacaagatcattcccacaagcatgtgtggtgtactgat |
29161837 |
T |
|
| Q |
223 |
gttagagaaaaatgtcact---cagcttgcaaaagttgcctttgcacaaggtcttttcctccacagtgtcgttgctatgatatcactaacttctgctatc |
319 |
Q |
| |
|
||||||||||||||| ||| ||| |||| | |||| ||||||||| || | ||||||||||||| |||||| ||||| |||||| ||||||||||| |
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| T |
29161836 |
gttagagaaaaatgtaactcaccaggttgcttagattgcgtttgcacaaagtttattcctccacagtgccgttgccatgatgtcactaccttctgctatc |
29161737 |
T |
|
| Q |
320 |
catcatgtagttaattaactatgtaattaaccatgcatgtgatgtga |
366 |
Q |
| |
|
|||| ||||||||||||| |||||||||||||||||||| |
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| T |
29161736 |
---aatgtgattaattaactatg----taaccatgcatgtgatgtga |
29161697 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 15 - 137
Target Start/End: Complemental strand, 29153753 - 29153631
Alignment:
| Q |
15 |
gaacaagaaggcaatgatgatgaagttagctttgttggttttcctcttgagcttcacttcaaccatggttgatgctcgtttcgatcgggcatccttcatc |
114 |
Q |
| |
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|||||||||||||||| ||||||||||||||||| |||||||||| ||| ||||||||||||| | |||||||||||||||||| |||||||||| |
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| T |
29153753 |
gaacaagaaggcaatggtgatgaagttagctttgctggttttccttttgggcttcacttcaactgttgttgatgctcgtttcgattcaacatccttcata |
29153654 |
T |
|
| Q |
115 |
actcaactgctttccaatggtga |
137 |
Q |
| |
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|||||| || | || |||||||| |
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| T |
29153653 |
actcaagtgatctcaaatggtga |
29153631 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 31 - 90
Target Start/End: Complemental strand, 29145170 - 29145111
Alignment:
| Q |
31 |
atgatgaagttagctttgttggttttcctcttgagcttcacttcaaccatggttgatgct |
90 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||| |
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|
| T |
29145170 |
atgatgaaattagctttgttggttttcctcttgagcttcacatcaaccatggttgatgct |
29145111 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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