View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10877_high_5 (Length: 251)
Name: NF10877_high_5
Description: NF10877
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10877_high_5 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 8 - 251
Target Start/End: Original strand, 38080905 - 38081140
Alignment:
| Q |
8 |
aagcagagatctatgctggaaaacattctgagagcttgtgttggattggctcctgagaacaacatgatccttgaatacaagtgaagtgaagtaatggttc |
107 |
Q |
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| T |
38080905 |
aagcagagatctatgctggaaaacattctgagagcttgtgttggattggctcctgagaacaacatgatccttgaatacaagtgaagtgaagtaatgtttc |
38081004 |
T |
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| Q |
108 |
ggttatatatataggaggaatttgggataactcagttcttatgtgcgtgcctaaaacttatcccatataggctcctttatttgttgttatattttgatat |
207 |
Q |
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| T |
38081005 |
ggt----tatataggaggaatttgggataactcagttcttatgtgcgtgcctaaaacttatcccat----gctcctttatttgttgttatattttgatat |
38081096 |
T |
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| Q |
208 |
gttggttagcatatgtacctaccaacatttgattgtgtcttttc |
251 |
Q |
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| T |
38081097 |
gttggttagcatatgtacctaccaacatttgattgtgtcttttc |
38081140 |
T |
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Target: chr3 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 20 - 92
Target Start/End: Original strand, 39701073 - 39701145
Alignment:
| Q |
20 |
atgctggaaaacattctgagagcttgtgttggattggctcctgagaacaacatgatccttgaatacaagtgaa |
92 |
Q |
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| T |
39701073 |
atgcttgaaaacatcatgagagcttgtgttggattggctccagagaacaacatgatcctcgagtacaagtgaa |
39701145 |
T |
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