View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10877_low_1 (Length: 388)
Name: NF10877_low_1
Description: NF10877
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10877_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 346; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 19 - 380
Target Start/End: Complemental strand, 35821271 - 35820910
Alignment:
| Q |
19 |
tttccgaattcgagtacttcgactatgttgtcaatcgctccagccgccatgattaaaatcttgttattgtcgtagatcgataggttgaacaatgcagtca |
118 |
Q |
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| T |
35821271 |
tttccgaattcgagtacttcgactatgttgtcaatcgctccagccgccatgattaaaatcttgttattgtcgtagatcgataggttgaacaatgcagtca |
35821172 |
T |
|
| Q |
119 |
caacatgttcttgaattcttgaatctttagatactaaaagtgttactagaaacggaatagcacctacctcggctatgattcttcggttatccataccggt |
218 |
Q |
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| T |
35821171 |
caacatgctcttgaattcttgaatctttagatactaaaagtgttactagaaacggaatagcacctacctcggctatgattcttcggttatccataccggt |
35821072 |
T |
|
| Q |
219 |
tttcgcgagcagacgtatctcgtacgcggattgtctttggatatcggtcgaaccagttgctaattttccaacaagaaattctgctgtcattttgacagca |
318 |
Q |
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| T |
35821071 |
ttttgcgagcagacgtatctcgtacgcggattgtctttggatatcggtcgaaccagttgctaattttccaacaagaaattctgctgtcattttgacagca |
35820972 |
T |
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| Q |
319 |
tcttttgatgctttgtttgctgaaatgtgatcaatagcattctcattcttgtgccctttgct |
380 |
Q |
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| T |
35820971 |
tcttttgatgctttgttttctgaaatgtgatcaatagcattctcattcttgtgccttttgct |
35820910 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 91 - 297
Target Start/End: Complemental strand, 1010484 - 1010276
Alignment:
| Q |
91 |
tagatcgataggttgaacaatgcagtcacaacatgttcttgaattcttgaatctttagatactaaaagtgttactagaaacggaatagcacctacctcgg |
190 |
Q |
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| T |
1010484 |
tagatagatagtttaaaaaatgcagtcaaaacatgttcatggattcttgaatatatagattttaaaatggttacaagaaatggaatagcccctacctctg |
1010385 |
T |
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| Q |
191 |
ctat-gattcttcggttatccataccggttttcgcgagca-gacgtatctcgtacgcggattgtctttggatatcggtcgaaccagttgctaattttcca |
288 |
Q |
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| T |
1010384 |
cttttgattcttctattatccatttcggttgttgcgagtaagccgaatctcgtatgcccattgttgttggatatcaattgaaccagatgcaaattttcca |
1010285 |
T |
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| Q |
289 |
acaagaaat |
297 |
Q |
| |
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| T |
1010284 |
acgagaaat |
1010276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 31 - 297
Target Start/End: Complemental strand, 1023565 - 1023303
Alignment:
| Q |
31 |
agtacttcgactatgttgtcaatcgctccagccgccatgattaaaatcttgttattgtcgtagatcgataggttgaacaatgcagtcacaacatgttctt |
130 |
Q |
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| T |
1023565 |
agtacttcaaatatgttgtgaaatgctccagctgccatgatcaaaatcttgttat------agatagatagtttgaaaatacccgtcaaaacatgttcct |
1023472 |
T |
|
| Q |
131 |
gaattcttgaatcttt-agatactaaaagtgttactagaaacggaatagcacctacctcggctat-gattcttcggttatccataccggttttcgcgagc |
228 |
Q |
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| T |
1023471 |
ggattctcgaatcttttagattttaaaagt-ttaccagaaatggaatagcccctacttctgctattgattcttctattgtccattccggttgttgcgagt |
1023373 |
T |
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| Q |
229 |
a-gacgtatctcgtacgcggattgtctttggatatcggtcgaaccagttgctaattttccaacaagaaat |
297 |
Q |
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| | || |||||||| || ||||| |||||||| | ||||||||| | |||||||||||||||||| |
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| T |
1023372 |
aagccgaatctcgtatgcccattgttgttggatattaattgaaccagttcccaattttccaacaagaaat |
1023303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 91 - 150
Target Start/End: Original strand, 1047179 - 1047238
Alignment:
| Q |
91 |
tagatcgataggttgaacaatgcagtcacaacatgttcttgaattcttgaatctttagat |
150 |
Q |
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| T |
1047179 |
tagatagatagtttgaaaaatgcagtcaaaacatgtttgtggattcttgaatctttagat |
1047238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 91 - 297
Target Start/End: Original strand, 40642411 - 40642618
Alignment:
| Q |
91 |
tagatcgataggttgaacaatgcagtcacaacatgttcttgaattcttgaatctttagatactaaaagtgttactagaaacggaatagcacctacctcgg |
190 |
Q |
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| T |
40642411 |
tagatagatagtttgaaatatgcagtcaaaacatgttcctggattcttgaatatttcgattttaaaatggttactagaaatagaatagcccctacctctg |
40642510 |
T |
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| Q |
191 |
cta-tgattcttcggttatccataccggttttcgcgagcagacgtatctcgtacgcggattgtctttggatatcggtcgaaccagttgctaattttccaa |
289 |
Q |
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||| |||||||| || ||||| || ||| | ||||| | || |||||||| || |||||| ||||||||| || |||||| ||| || ||||||| |
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| T |
40642511 |
ctattgattcttttattgtccattccagttgttgcgagtaaccgaatctcgtatgcacattgtcattggatatcagttgaaccatttggcaactttccaa |
40642610 |
T |
|
| Q |
290 |
caagaaat |
297 |
Q |
| |
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| |||||| |
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|
| T |
40642611 |
cgagaaat |
40642618 |
T |
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