View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10877_low_3 (Length: 373)
Name: NF10877_low_3
Description: NF10877
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10877_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 351; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 7 - 361
Target Start/End: Original strand, 47946413 - 47946767
Alignment:
| Q |
7 |
cttatttacttaactgtatgaggtagtgggtgccacataaacaaaagaaaatgatgaatgatttaacaagaaattgcaaaattgagaaataattgcatgt |
106 |
Q |
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| T |
47946413 |
cttatttacttaactgtatggggtagtgggtgccacataaacaaaagaaaatgatgaatgatttaacaagaaattgcaaaattgagaaataattgcatgt |
47946512 |
T |
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| Q |
107 |
attttattgttgatcaaacacattttaacatctagttcaaggacaatatggaggtcttcgcccaggtcctccaaaaaagaagacaggatcttttccatat |
206 |
Q |
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| T |
47946513 |
attttattgttgatcaaacacattttaacatctagttcaaggacaatatggaggtcttcgcccaggtcctccaaaaaagaagacaggatcttttccatat |
47946612 |
T |
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| Q |
207 |
tgaacatcgttgagggcactgtaacagtaaggttctgctgcatatgtacttacaaattgtggatacttgagagtttctgaataatccttaattctcacat |
306 |
Q |
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| T |
47946613 |
tgaacatcgttgagggcactgtaacagtaaggttctgctgcatatgtacttacaaattgtggatacttgagagtttctgaataatccttaattctcacat |
47946712 |
T |
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| Q |
307 |
ttgtcatgtaacatgcgaacccaaatcgaccacttgctgcttctccactacccat |
361 |
Q |
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| T |
47946713 |
ttgtcatgtaacatgcgaacccaaatcgaccacttgctgcttctccactacccat |
47946767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 168 - 363
Target Start/End: Original strand, 47927998 - 47928193
Alignment:
| Q |
168 |
ccaggtcctccaaaaaagaagacaggatcttttccatattgaacatcgttgagggcactgtaacagtaaggttctgctgcatatgtacttacaaattgtg |
267 |
Q |
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| T |
47927998 |
ccagctcctccaaagtagaatacaggatcttttccatatggagcgtcattgagggcactgtaacaatatggttctgcagcatgtgtacttacaaatgatg |
47928097 |
T |
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| Q |
268 |
gatacttgagagtttctgaataatccttaattctcacatttgtcatgtaacatgcgaacccaaatcgaccacttgctgcttctccactacccatct |
363 |
Q |
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| T |
47928098 |
gatacttaagagcttgtgaataatctttaattctcacactacccatgtaacatgcggccccaaatcgaccacttgctgcatctccactacccatct |
47928193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 174 - 363
Target Start/End: Original strand, 47935438 - 47935627
Alignment:
| Q |
174 |
cctccaaaaaagaagacaggatcttttccatattgaacatcgttgagggcactgtaacagtaaggttctgctgcatatgtacttacaaattgtggatact |
273 |
Q |
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| T |
47935438 |
cctccaaaataaaatacaggatcttgtccatatggagcttcattgagggcactgtaacaatatggttctgcagcataagtagttacatatgctggatatt |
47935537 |
T |
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| Q |
274 |
tgagagtttctgaataatccttaattctcacatttgtcatgtaacatgcgaacccaaatcgaccacttgctgcttctccactacccatct |
363 |
Q |
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| T |
47935538 |
tgagagcttttgaataatccttaattctaacattgcttatgtaacatgcgaacccaaatcgaccacttgcttcttctccactacccatct |
47935627 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 141 - 263
Target Start/End: Original strand, 47918209 - 47918331
Alignment:
| Q |
141 |
gttcaaggacaatatggaggtcttcgcccaggtcctccaaaaaagaagacaggatcttttccatattgaacatcgttgagggcactgtaacagtaaggtt |
240 |
Q |
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| T |
47918209 |
gttcaaggacaatgaggaggccttcgtccagcacctccaaaatagaatacaggatcttttccatatggagcatcattgaaggcactgtaacaatatggtt |
47918308 |
T |
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| Q |
241 |
ctgctgcatatgtacttacaaat |
263 |
Q |
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| T |
47918309 |
ctatagcatgtgtacttacaaat |
47918331 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 140 - 304
Target Start/End: Original strand, 47909042 - 47909206
Alignment:
| Q |
140 |
agttcaaggacaatatggaggtcttcgcccaggtcctccaaaaaagaagacaggatcttttccatattgaacatcgttgagggcactgtaacagtaaggt |
239 |
Q |
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||||||||||||||| ||||| ||| || | |||||||| ||||| ||||| |||||||||||| || || || |||||||||||||| | ||| |
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| T |
47909042 |
agttcaaggacaataacgaggttgtcgtccggcccctccaaagaagaacacagggtcttttccatatggagcaatatttagggcactgtaacactcaggc |
47909141 |
T |
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| Q |
240 |
tctgctgcatatgtacttacaaattgtggatacttgagagtttctgaataatccttaattctcac |
304 |
Q |
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| T |
47909142 |
tctccagcatgtgtggttacgaattgtgggtacttaagagcttgtgagtaatctttaattctcac |
47909206 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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