View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10877_low_4 (Length: 357)
Name: NF10877_low_4
Description: NF10877
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10877_low_4 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 324; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 17 - 344
Target Start/End: Original strand, 35620245 - 35620572
Alignment:
| Q |
17 |
aataattggcctctgtgccatttttctggtgattcccttaagtttgtgtcaatcttcttatatatatgcattactagtatttactatagtagctgagaat |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
35620245 |
aataattggcctctgtgccatttttctggtgattcccttaagtttgtgtcaatcttcttatatatatgcattactattatttactatagtagctgagaat |
35620344 |
T |
|
| Q |
117 |
ttcttggatttgcatacaacttgagctaacttagtttgttctatcctaagcttttcatgctggcattaattaactactactgttgcttagttaaagacgg |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35620345 |
ttcttggatttgcatacaacttgagctaacttagtttgttctatcctaagcttttcatgctggcattaattaactactactgttgcttagttaaagacgg |
35620444 |
T |
|
| Q |
217 |
attggaagtcaaatccaaagtattattttgtctcttattgtgggatttaagtgaactcagtcgccaaatgtaaacttcacttcaaggacatggaaaaatg |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35620445 |
attggaagtcaaatccaaagtattattttgtctcttattgtgggatttaagtgaactcagtcgccaaatgtaaacttcacttcaaggacatggaaaaatg |
35620544 |
T |
|
| Q |
317 |
gttatgtggttctgtttcttttttgcct |
344 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
35620545 |
gttatgtggttctgtttcttttttgcct |
35620572 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University