View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10878_high_2 (Length: 325)
Name: NF10878_high_2
Description: NF10878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10878_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 7 - 309
Target Start/End: Original strand, 6935120 - 6935422
Alignment:
| Q |
7 |
ggagcacagatacttgtttatgaatatatgccacatggaacgctttctcaacatttgcagagagagaggggtaaaggtcttccgtggacaatacgactca |
106 |
Q |
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| T |
6935120 |
ggagaacagatacttgtttatgaatatatgccacatggaacgctttctcaacatttgcagagagagaggggtaaaggtcttccgtggacaatacgactca |
6935219 |
T |
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| Q |
107 |
ccattgcttctgaaactgctaatgctatagcttatctccattctgcaattcatcctccaatttaccacagagacataaaatccagcaatatactcttgga |
206 |
Q |
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| T |
6935220 |
ccattgcttctgaaactgctaatgctatagcttatctccattctgcaattcatcctccaatttaccacagagacataaaatccagcaatatactcttgga |
6935319 |
T |
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| Q |
207 |
ttataactacaaatctaaagtagctgattttgggctttctaggcttggcttgatggagacatcacatatttcaactgcaccacaagggactccaggttat |
306 |
Q |
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| T |
6935320 |
ttataactacaaatctaaagtagctgattttgggctttctaggcttggcttgatggagacatcacatatttcaactgcaccacaagggactccaggttat |
6935419 |
T |
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| Q |
307 |
gtg |
309 |
Q |
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||| |
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| T |
6935420 |
gtg |
6935422 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 95; Significance: 2e-46; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 16 - 308
Target Start/End: Complemental strand, 33644770 - 33644481
Alignment:
| Q |
16 |
atacttgtttatgaatatatgccacatggaacgctttctcaacatttgcagagagagaggggtaaaggtcttccgtggacaatacgactcaccattgctt |
115 |
Q |
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| T |
33644770 |
atacttgtttatgagtatatgccaaatggaacactatcgcaacatttacaaagagaaagaggtggagtacttccttggacaataagactcaccattgcct |
33644671 |
T |
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| Q |
116 |
ctgaaactgctaatgctatagcttatctccattctgcaattcatcctccaatttaccacagagacataaaatccagcaatatactcttggattataacta |
215 |
Q |
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| T |
33644670 |
ctgaaactgctaatgctatagcatttctccattcttcaa---atcctccaatttatcatagagacataaaatctagtaatatacttttggactttagctt |
33644574 |
T |
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| Q |
216 |
caaatctaaagtagctgattttgggctttctaggcttggcttgatggagacatcacatatttcaactgcaccacaagggactccaggttatgt |
308 |
Q |
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| || |||||||| ||||| || ||||| || |||||| ||| || ||||||||||| ||||| || || ||||||||||| |||||||| |
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| T |
33644573 |
tcattcgaaagtagcagatttcggactttccagacttggcatgacagaaacatcacatatctcaaccgcgcctcaagggactccgggttatgt |
33644481 |
T |
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