View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10878_high_3 (Length: 255)
Name: NF10878_high_3
Description: NF10878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10878_high_3 |
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Alignment Details
Target: chr6 (Bit Score: 177; Significance: 2e-95; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 5470634 - 5470381
Alignment:
| Q |
1 |
gcctatgacccaattgaccgttttaacctcaattgtggcacctcaggaaactctaccgacggacaaagaacatggacaggagacataaactcaaaacttt |
100 |
Q |
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| T |
5470634 |
gcctacgacccaattgaccgttttaacctcaattgtggcacaacaggaaactctaccgacggacaaagaacatggacaggagacataaactcaaaacttt |
5470535 |
T |
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| Q |
101 |
tgtcatcattacaaaacaatccaacaacagtttctgttccaaaaaca------------tccataaacaaaatcccatattcaacagctcgtttatcaca |
188 |
Q |
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| T |
5470534 |
tgtcatcatcacaaaacaatccaacaacaatttctgttccaaaaacaacacaaaatccttctagcaacaaaattccatattcaacagctcgtttatcaca |
5470435 |
T |
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| Q |
189 |
ctcaatattcaactattctttacccgtcagtaaaggtcctaaattcctccgtct |
242 |
Q |
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| T |
5470434 |
ctcaatattcaactattctttacccgtcagtaaaggtcctaaattcctccgtct |
5470381 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 4 - 242
Target Start/End: Original strand, 5476298 - 5476548
Alignment:
| Q |
4 |
tatgacccaattgaccgttttaacctcaattgtggcacctcaggaaactctaccgacggacaaagaacatggacaggagacataaactcaaaacttttgt |
103 |
Q |
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| T |
5476298 |
tatgacccaattgaacactttaccgtcagttgtggcgcaacaggaaactctaccgacggacaaagaacatggacaggagacataaactcaaaacttttgt |
5476397 |
T |
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| Q |
104 |
catcattacaaaacaatccaacaacagtttctgttccaaaaaca------------tccataaacaaaatcccatattcaacagctcgtttatcacactc |
191 |
Q |
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| T |
5476398 |
catcattacaaaacaatccaacaacaatttctgttccaaaaacaacacaaaatccttctagcaacaaagttccatattcaacagctcgtttatcacactc |
5476497 |
T |
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| Q |
192 |
aatattcaactattctttacccgtcagtaaaggtcctaaattcctccgtct |
242 |
Q |
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| T |
5476498 |
aatattcaactattctttacccgtcagtaaaggtcctaaattcctccgtct |
5476548 |
T |
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