View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10878_low_1 (Length: 467)
Name: NF10878_low_1
Description: NF10878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10878_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 372; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 18 - 457
Target Start/End: Original strand, 55977415 - 55977871
Alignment:
| Q |
18 |
attttgctcggccgccaacatcctctgcttcccggaagtagcccagagtcttgaaaagcacgaaggtgatgaaaatttcaaggcttacagcgataagaat |
117 |
Q |
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| T |
55977415 |
attttgctcggccgccaacctcctctgcctcccggaagtagcccagagtcttgaaaagcacgaaggtgatgaaaatttcaaggcttacagcgataagaat |
55977514 |
T |
|
| Q |
118 |
ttcaccaactacggaacgagtctacccggtggacacgactcgttcaaaaactactc---------------tgacggagaggtgaatgatttccgtcgct |
202 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||| |
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| T |
55977515 |
ttcaccaactacggaacgagtctacccggtggacacgactcgttcaaaaactactcggacggagactactctgacggagaggtgaatgatttctgtcgct |
55977614 |
T |
|
| Q |
203 |
acagccgaaactctgccggccataaagaaactttcaccaactac--gccacaaacgccaacgtcgctgatcaaagctttcacacttacggcgctggagcc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55977615 |
acagccgaaactctgccggccataaagaaactttcaccaactacacgccacaaacgccaacgtcgctgatcaaagctttcacacttacggcgctggagcc |
55977714 |
T |
|
| Q |
301 |
accggcggcaggggcgagttcaagcaatacacaactgaagccaacgttccaaatgaagttttcacttcttactccgataacgccaacggtagaactcaat |
400 |
Q |
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||||||||||||| |||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55977715 |
accggcggcagggacgagttcaagcaatgcacaactgaagccaacgttccaaacgaagttttcacttcttactccgataacgccaacggtagaactcaat |
55977814 |
T |
|
| Q |
401 |
ccttcaactcttacaccgaaaacggtaacggcggtgaccaatctttcacttcctatg |
457 |
Q |
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| T |
55977815 |
ccttcaactcttacaccgaaaacggtaacggcggtgaccaatctttcacttcctatg |
55977871 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 223; Significance: 1e-122; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 18 - 455
Target Start/End: Original strand, 14865096 - 14865542
Alignment:
| Q |
18 |
attttgctcggccgccaacatcctctgcttcccggaagtagcccagagtcttgaaaagcacgaaggtgatgaaaatttcaaggcttacagcgataagaat |
117 |
Q |
| |
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||||||||| ||||| ||| | |||||||| |||||||||||||||||||| |||||||||| || ||||| ||||||| |||||| || ||||| |
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| T |
14865096 |
attttgctcagccgcgaacctactctgcttgccggaagtagcccagagtctcgaaaagcacggagatgatgtaaatttcgccatttacagagacaagaac |
14865195 |
T |
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| Q |
118 |
ttcaccaactacggaacgagtctacccggtggacacgactcgttcaaaaactactctgacggaga---------ggtgaatgatttccgtcgctacagcc |
208 |
Q |
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|||||||||||||||||| || |||||||||| |||||||||||||||||||| ||||| || |||||| ||||||||||||||||||| |
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| T |
14865196 |
ttcaccaactacggaacggatcgacccggtggatttgactcgttcaaaaactactccgacggtgaaaacgttctggtgaacgatttccgtcgctacagcc |
14865295 |
T |
|
| Q |
209 |
gaaactctgccggccataaagaaactttcaccaactacgccacaaacgccaacgtcgctgatcaaagctttcacacttacggcgctggagccaccggcgg |
308 |
Q |
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||||||| ||||||||||||||||| ||||||| |||||| || |||||||||||||| ||||||||||| |||||||||||||| |||||||||||||| |
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| T |
14865296 |
gaaactccgccggccataaagaaaccttcaccagctacgctaccaacgccaacgtcgccgatcaaagcttccacacttacggcgccggagccaccggcgg |
14865395 |
T |
|
| Q |
309 |
caggggcgagttcaagcaatacacaactgaagccaacgttccaaatgaagttttcacttcttactccgataacgccaacggtagaactcaatccttcaac |
408 |
Q |
| |
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| | ||||||||||| ||||||||||||| ||||||||||||| ||||||||||||||||||||||||| ||||||||| ||||| |||||||||||| |
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| T |
14865396 |
cggcggcgagttcaaaacatacacaactgaaaccaacgttccaaacgaagttttcacttcttactccgatagcgccaacggaagaacacaatccttcaac |
14865495 |
T |
|
| Q |
409 |
tcttacaccgaaaacggtaacggcggtgaccaatctttcacttccta |
455 |
Q |
| |
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|||||||| |||||||||||| ||||| | ||||||||||||||||| |
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|
| T |
14865496 |
tcttacacagaaaacggtaacagcggtcaacaatctttcacttccta |
14865542 |
T |
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