View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10878_low_11 (Length: 279)
Name: NF10878_low_11
Description: NF10878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10878_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 12 - 264
Target Start/End: Complemental strand, 20140832 - 20140580
Alignment:
| Q |
12 |
agaagagaaaggttaatgggtcattgagttcacatttagccacaggaaaatggactcttagtagagaacaaggaagtaagttactagcaagacaatttcg |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20140832 |
agaagagaaaggttaatgggtcattgagttcacatttagctacaggaaaatggactcttagtagagaacaaggaagtaagttactagcaagacaatttcg |
20140733 |
T |
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| Q |
112 |
tgatgattgtttatacgtttgtgattggcctggttgtgttcatttggaagagaagagaaagtatagactttttcgaggtgtttttatgaatttcaagaaa |
211 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
20140732 |
tgatgattgtttatacgtttgtgattggcctggttgtgttcatttggaagagaagagaaagtatagactttttcgaggtatttttatgaatttcaagaaa |
20140633 |
T |
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| Q |
212 |
acacgtgtttggaagactgtgaatgatattagtaatcggaagaagattgattt |
264 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20140632 |
acacgtgtttggaagactgtgaatgatattagtaatcggaagaagattgattt |
20140580 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 12 - 264
Target Start/End: Complemental strand, 44318247 - 44317995
Alignment:
| Q |
12 |
agaagagaaaggttaatgggtcattgagttcacatttagccacaggaaaatggactcttagtagagaacaaggaagtaagttactagcaagacaatttcg |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44318247 |
agaagagaaaggttaatgggtcattgagttcacatttagctacaggaaaatggactcttagtagagaacaaggaagtaagttactagcaagacaatttcg |
44318148 |
T |
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| Q |
112 |
tgatgattgtttatacgtttgtgattggcctggttgtgttcatttggaagagaagagaaagtatagactttttcgaggtgtttttatgaatttcaagaaa |
211 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
44318147 |
tgatgattgtttatacgtttgtgattggcctggttgtgttcatttggaagagaagagaaagtatagactttttcgaggtatttttatgaatttcaagaaa |
44318048 |
T |
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| Q |
212 |
acacgtgtttggaagactgtgaatgatattagtaatcggaagaagattgattt |
264 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44318047 |
acacgtgtttggaagactgtgaatgatattagtaatcggaagaagattgattt |
44317995 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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